Uses deprecated pandas accessor: "Passing list-likes to .loc or [] with any missing labels is no longer supported."
Closed this issue · 6 comments
platipodium commented
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1321, in _validate_read_indexer
raise KeyError(
KeyError: "Passing list-likes to .loc or [] with any missing labels is no longer supported. The following labels were missing: Int64Index([6719, 5046, 2701, 1495, 1034,\n ...\n 7209, 2425, 8597, 2434, 1847],\n dtype='int64', name='id', length=221). See https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#deprecate-loc-reindex-listlike"
danielskatz commented
This is associated with openjournals/joss-reviews#3351
virgesmith commented
@platipodium can you give me some context i.e. which example you were running to get this error?
(I will test all the examples anyway)
platipodium commented
Ups, forgot to paste the command line (`mpirun -np 4 examples/wolf-sheep/model.py) and python trace
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/model.py", line 34, in <module>
Traceback (most recent call last):
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/model.py", line 34, in <module>
Traceback (most recent call last):
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/model.py", line 34, in <module>
Traceback (most recent call last):
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/model.py", line 34, in <module>
no.run(m)
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/wolf_sheep.py", line 96, in step
no.run(m)
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/wolf_sheep.py", line 96, in step
self.__step_sheep()
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/wolf_sheep.py", line 158, in __step_sheep
no.run(m)
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/wolf_sheep.py", line 96, in step
no.run(m)
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/wolf_sheep.py", line 96, in step
self.__step_sheep()
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/wolf_sheep.py", line 158, in __step_sheep
self.__step_sheep()
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/wolf_sheep.py", line 158, in __step_sheep
grass_available = self.grass.loc[self.sheep.cell]
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 895, in __getitem__
self.__step_sheep()
File "/Users/Lemmen/devel/python/neworder/examples/wolf-sheep/wolf_sheep.py", line 158, in __step_sheep
grass_available = self.grass.loc[self.sheep.cell]
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 895, in __getitem__
grass_available = self.grass.loc[self.sheep.cell]
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 895, in __getitem__
return self._getitem_axis(maybe_callable, axis=axis)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1113, in _getitem_axis
return self._getitem_axis(maybe_callable, axis=axis)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1113, in _getitem_axis
grass_available = self.grass.loc[self.sheep.cell]
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 895, in __getitem__
return self._getitem_axis(maybe_callable, axis=axis)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1113, in _getitem_axis
return self._getitem_iterable(key, axis=axis)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1053, in _getitem_iterable
return self._getitem_iterable(key, axis=axis)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1053, in _getitem_iterable
return self._getitem_axis(maybe_callable, axis=axis)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1113, in _getitem_axis
return self._getitem_iterable(key, axis=axis)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1053, in _getitem_iterable
keyarr, indexer = self._get_listlike_indexer(key, axis, raise_missing=False)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1266, in _get_listlike_indexer
keyarr, indexer = self._get_listlike_indexer(key, axis, raise_missing=False)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1266, in _get_listlike_indexer
keyarr, indexer = self._get_listlike_indexer(key, axis, raise_missing=False)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1266, in _get_listlike_indexer
return self._getitem_iterable(key, axis=axis)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1053, in _getitem_iterable
self._validate_read_indexer(keyarr, indexer, axis, raise_missing=raise_missing)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1321, in _validate_read_indexer
self._validate_read_indexer(keyarr, indexer, axis, raise_missing=raise_missing)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1321, in _validate_read_indexer
keyarr, indexer = self._get_listlike_indexer(key, axis, raise_missing=False)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1266, in _get_listlike_indexer
self._validate_read_indexer(keyarr, indexer, axis, raise_missing=raise_missing)
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/pandas/core/indexing.py", line 1321, in _validate_read_indexer
raise KeyError(
KeyError: "Passing list-likes to .loc or [] with any missing labels is no longer supported. The following labels were missing: Int64Index([9469, 7551, 3445, 7827, 2072,\n ...\n 9849, 2135, 8400, 7497, 5643],\n dtype='int64', name='id', length=228). See https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#deprecate-loc-reindex-listlike"
virgesmith commented
this example is another that isn't intended to be run in parallel - it doesn't have any logic to divide up the computation to run on multiple processes. having said that, the actual error is distinctly unobvious (and I don't get this error running serially) so I'm just going to add an assertion that it's running in serial mode, hope this is sufficient
virgesmith commented
@platipodium I'll close this one too unless you respond otherwise
platipodium commented
Sure, we can close this.