virtualcell/vcdb

Reflections from spot checking the SBML directory

jonrkarr opened this issue · 1 comments

jonrkarr commented

SBML directory: https://github.com/virtualcell/vcdb/blob/main/published/biomodel/omex/sbml/

  • Checked 100596964, 12119723
  • Manifests: look good
  • OMEX metadata/RDF files: missing; required for publication to BioSimulations
  • Summary images: missing; we suggest including a graphical summary for publication to BioSimulations

100596964

  • SED-ML: use with VCML looks good (passes validation)

12119723

  • Archive has 6 SBML files, but only 3 are used in SED-ML -- see #6
  • SBML has errors -- see #5
jonrkarr commented

Closing. Needed/recommended changes are outlined in other issues.