A BRCAness phenotype without genetic or epigenetic inactivation of homologous recombination genes dictates response to chemotherapy in metastatic colorectal cancer
Snakemake pipeline to reproduce bioinformatics main figures panels.
Keep in mind that final figures were assembled manually (e.g. for legend positioning) and that some rules produce more than one plot (with/without legend) to ease those manual fixes.
A Dockerfile with the same R version, R packages and overall linux environment used to produce the Figures is available here: https://github.com/vodkatad/snakemake_docker/blob/master/Dockerfiles/godot/Dockerfile
The relevant rules are found in dataset/figures/Snakefile.