vreuter
Computational biology software, with interest in analyzing genome architecture and regulation by imaging and sequencing.
Pinned Repositories
pypiper
Python toolkit for building restartable pipelines
looper
A job submitter for Portable Encapsulated Projects
peppy
Project metadata manager for PEPs in Python
refgenie
Reference genome resource manager
adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
aicspylibczi
Python module utilizing libCZI for reading Zeiss CZI files.
haskell-exercises-ThinkingFunctionally-RichardBird
Haskell exercises, Thinking Functionally with Haskell by Richard Bird
peppy
A python-based project metadata manager for portable encapsulated projects
python-type-stubs
A set of type stubs for popular Python packages. These are works in progress from the Microsoft Python team and others, with the intent that they are contributed to typeshed or to the associated packages once sufficiently complete.
vreuter's Repositories
vreuter/python-type-stubs
A set of type stubs for popular Python packages. These are works in progress from the Microsoft Python team and others, with the intent that they are contributed to typeshed or to the associated packages once sufficiently complete.
vreuter/aicspylibczi
Python module utilizing libCZI for reading Zeiss CZI files.
vreuter/cats
Lightweight, modular, and extensible library for functional programming.
vreuter/docs.scala-lang
The Scala Documentation website
vreuter/eido
Validator for PEP objects
vreuter/Expression
Pragmatic functional programming for Python inspired by F#
vreuter/fs2-data
streaming data parsing and transformation library
vreuter/gerlib
A library of general-purpose tools, typically for processing or analysis of data from a sequencing and/or imaging experiment
vreuter/gertils
general GERlich group uTILitieS
vreuter/hypothesis
Hypothesis is a powerful, flexible, and easy to use library for property-based testing.
vreuter/iron
Strong type constraints for Scala
vreuter/jzarr
A Java implementation of the API offered by the Python zarr package
vreuter/looper
A job submitter that uses Portable Encapsulated Projects
vreuter/looptrace
Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace
vreuter/looptrace-loci-vis
Visualisation (in `napari`) of locus-specific spots from looptrace
vreuter/napari-docs
Documentation for napari (other than API docs)
vreuter/netcdf-java
The Unidata netcdf-java library
vreuter/npe2
napari plugin engine v2
vreuter/nuclei-vis-napari
Visualisation (in `napari`) of nuclei from looptrace
vreuter/numpydoc_decorator
Build numpy-style docstrings programmatically and apply them using a decorator.
vreuter/ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
vreuter/poetry-core
Poetry PEP 517 Build Backend & Core Utilities
vreuter/pyeffects
Handle side-effects in Python like a boss. Implements functional types for Either, Option, Try, and Future.
vreuter/pypiper
Python toolkit for building restartable pipelines
vreuter/scala-csv
CSV Reader/Writer for Scala
vreuter/scalacheck
Property-based testing for Scala
vreuter/spotfishing
Finding FISH spots
vreuter/upickle
uPickle: a simple, fast, dependency-free JSON & Binary (MessagePack) serialization library for Scala
vreuter/XChart
XChart is a light-weight Java library for plotting data.
vreuter/zarr-java
Java implementation of the Zarr Specification