ValueError: invalid literal for int() with base 10: 'NW_001849834.1

[MjelleLab]

Hi,
I am using the refseq_bf database, and I get the following error when running CCMetagen:

ValueError: invalid literal for int() with base 10: 'NW_001849834.1
command:
python ~/software/CCMetagen/CCMetagen/CCMetagen.py -i $FILE.kma.res -o $FILE.CCMetagen.results
kma works as expected.

[vrmarcelino]

Hi!

I will try to reproduce this error. Could you let me know which version of CCMetagen are you using?

Thanks!

[MjelleLab]

Hi!

I will try to reproduce this error. Could you let me know which version of CCMetagen are you using?

Thanks!

I have v1.3.0

[vrmarcelino]

Hi,

I get a similar error when forgetting to add the '-r RefSeq' flag when running CCMetagen with this database. The default expects the NCBI nt format.

Could that be the issue for you?