Pinned Repositories
atlas
Expression Atlas
anton-khodak.github.io
Personal blog
CORRAL
marker_alignments
process and summarise alignments of metagenomic sequencing reads to reference databases of marker genes
ortholog_pairs
Pairs of orthologs sometimes lie next to each other - find them using WormBase ParaSite
shellcheck-tap-integration
Adapt Shellcheck output to Test Anything Protocol
silva-for-dada2
Format the SILVA LSU dataset for DADA2's assignTaxonomy and addSpecies
wbps-expression
Transcriptomic data for WormBase ParaSite
wormbase-pipeline
Wormbase Build Pipeline
wbazant's Repositories
wbazant/CORRAL
wbazant/silva-for-dada2
Format the SILVA LSU dataset for DADA2's assignTaxonomy and addSpecies
wbazant/marker_alignments
process and summarise alignments of metagenomic sequencing reads to reference databases of marker genes
wbazant/ApiCommonMetadataRepository
Git mirror of the ApiCommonMetadataRepository svn project. Commits here will be lost.
wbazant/ApiCommonWebsite
wbazant/argdown
argparse to Markdown for your README.md!
wbazant/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
wbazant/dataset-handler-biom
wbazant/demos
wbazant/didactic-funicular
wbazant/dots-patterns
Patterns for decentralized protocols and applications.
wbazant/EbrcWebsiteCommon
wbazant/EukDetect
wbazant/falling-fruit-web
Mobile-friendly website for Falling Fruit
wbazant/humann
HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
wbazant/markerAlignmentsPaper
wbazant/monday
Python client for Monday.com
wbazant/mpmp-plasmodb
Demo on integrating MPMP within PlasmoDB
wbazant/nextflow-extmodules-example
Example for using an external submodule in Nextflow with DSL2
wbazant/nextflow-hello-dsl2
Hello world in DSL2 Nextflow
wbazant/OpenAPI-Specification
The OpenAPI Specification Repository
wbazant/pomidor
The application for playing the game of pomidor
wbazant/ShortRead
wbazant/sra-traces-results
Download taxon abundances from the SRA Taxonomic Analysis Tool (STAT) for each run in a metagenomic study
wbazant/TADA
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
wbazant/usefulpatches
Useful Patches public site
wbazant/wbazant.github.io
wbazant/wdk-mockups
wbazant/WDKClient
wbazant/Yancy
A tiny CMS / REST API using Mojolicious