Can I used this pipeline to identify transposon from WES data

[kyle-lk]

Can I used this pipeline to identify transposon from WES data

[tianxiongbb]

My suggestion is that you can try it, and it should work well. But keep in mind that you are using WES data, so only transposon insertions in exons will be identified; insertions outside exons might be missed simply because there is no read covered.