Does not work transcript picture for some genes
Closed this issue · 5 comments
I tried 3 different browsers.
Cutaneous melanoma, STK19
Hi @andreyurch,
Thanks for reporting this bug!
The gene STK19 has two chromosome location: chr6 and chr6_dbb_hap3. The TSVdb could not deal with those two loations of STK19, thus the bug apeared.
And as the TCGA data only cover the chr6. Therefore, we only include the primary reference chr6 to avoid this error.
4acd2aa
A gene can not be located in two different locations. Yes, there are different annotations, but you can choose a single, the canonical one and visualize it. Why no to correctly visualize transcripts on the chr6?
Why no to correctly visualize transcripts on the chr6?
Hi @andreyurch. That's what we have done. Maybe I did not make it clear in my last comment.
We have updated the code, see commit 4acd2aa. Now only the canonical chromosomes are used. The case you described has been solved.
I apologize for the misunderstanding. Thank you very much!
You are welcome!
Again, thank you for letting us know the bug!