How can I get the exon usage value?
Opened this issue · 2 comments
h20gg702 commented
Hi, Thanks for developing this database. Could you tell me how can I download the exon usage value? If my understanding is correct, data downloaded from the "Download Data" include only the original or normalized exon count value?
wenjie1991 commented
Hi, the value is "RPKM (Reads Per Kilobase of exon model per Million mapped reads)" for the exon value in the table from "Download Data".
And for the isoform and gene expression, they are the normalized expression value calculated by RSEM.
Here are the link of original data:
http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/ACC/20160128/gdac.broadinstitute.org_ ACC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.Level_3.2016012800.0.0.tar.gz
http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/ACC/20160128/gdac.broadinstitute.org_ ACC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data.Level_3.2016012800.0.0.tar.gz
http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/ACC/20160128/gdac.broadinstitute.org_ ACC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data.Level_3.2016012800.0.0.tar.gz
http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/ACC/20160128/gdac.broadinstitute.org_ ACC.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data.Level_3.2016012800.0.0.tar.gz
h20gg702 commented