WikiPathways

Open source software development related to the WikiPathways project

Pinned Repositories

cord-19
Pathway knowledge extracted from CORD-19 dataset for the fight against COVID-19
Language:HTML8 14 12
cxsd
Streaming XSD parser and XML parser generator with TypeScript output
Language:TypeScript11 2 06
cytoscape-wikipathways-app
WikiPathways app for Cytoscape to open and access pathways from WikiPathways
Language:Java5 9 1317
pathway-figure-ocr
Extracting gene sets from published pathway figures
Language:Jupyter Notebook15 15 332
pvjs
JavaScript-based pathway viewer and editor
Language:TypeScript33 16 32919
pywikipathways
Python Client Package for WikiPathways
Language:Python15 15 23
rWikiPathways
R package for WikiPathways API
Language:HTML15 15 296
wikipathways-database
WikiPathways Database
Language:Shell3 13 4115
wikipathways.github.io
GitHub pages for GPML-Repo
Language:HTML5 13 8618
wikipathways.org
The main web site for the WikiPathways project.
Language:PHP9 13 1158

WikiPathways's Repositories

wikipathways/pywikipathways
Python Client Package for WikiPathways
Language:Python15 15 23
wikipathways/rWikiPathways
R package for WikiPathways API
Language:HTML15 15 296
wikipathways/cytoscape-wikipathways-app
WikiPathways app for Cytoscape to open and access pathways from WikiPathways
Language:Java5 9 1317
wikipathways/wikipathways.github.io
GitHub pages for GPML-Repo
Language:HTML5 13 8618
wikipathways/GPML2RDF
GPML2RDF converter
Language:Java4 11 1122
wikipathways/wikipathways-database
WikiPathways Database
Language:Shell3 13 4115
wikipathways/academy
Organized training examples for new WikiPathways authors
Language:JavaScript2 18 424
wikipathways/gpml-to-cx2
GPML to CX2 Converter
Language:JavaScript2 13 51
wikipathways/reactome-gpml
Repository for GPML versions of Reactome pathways
Language:Makefile2 2 2
wikipathways/Snorql-UI
Language:JavaScript2 3 11
wikipathways/SPARQLQueries
Queries for the WikiPathways SPARQL endpoint.
Language:Python2 5 92
wikipathways/meta-data-action
Language:Java1 11 102
wikipathways/pfocr-pmcfigurebot
Query figures indexed by PubMed Central and collect metadata
Language:R1 1 31
wikipathways/wikipathways-api-client-java
Java library for WikiPathways webservice
Language:Java1 9 174
wikipathways/wikipathways-data-release
Monthly data release
Language:HTML1 3 41
wikipathways/wikipathways-help
1 14 321
wikipathways/WikiPathwaysCurator
Unit tests that validate the WikiPathways content and support the curation of the knowledge base.
Language:Java1 11 272
wikipathways/pfocr-database
Jekyll setup and database for the Pathway Figure OCR project
Language:HTML0 4 83
wikipathways/daphnia-subdomain
Language:HTML0 0
wikipathways/EuropePMCLinks
Repository for code to create the Europe PMC external links
Language:Groovy5 4
wikipathways/fdp
Repository with the content of the WikiPathways FAIR Data Point.
Language:HTML5 6
wikipathways/sandbox-wp-assets
Playground for actions dealing with wikipathways-assets repo
wikipathways/sandbox-wp-db
Playground for new GPML processing and curation
Language:Shell12 143
wikipathways/sandbox-wp.gh.io
Sandbox mirror of wikipathways.github.io
Language:HTML13 0
wikipathways/sr24-subdomain
Language:HTML
wikipathways/wikipathways-assets
Accessory files generated downstream of approved GPMLs
13 01
wikipathways/wikipathways-collection
Language:Java14 21
wikipathways/wikipathways-homology
Pathway database for homology-mapped content
3 1
wikipathways/wikipathways-java-client
Java library for WikiPathways webservice
Language:Java
wikipathways/wikipathways-pmcfigurebot
Query figures indexed by PubMed Central and collect metadata
Language:R1 3