wikipathways/WikiPathwaysCurator

Issues

• mim-modification incorrectly flagged by test for metabolite/non-metabolite interaction

  #31 opened 7 months ago by egonw
  0

• reports in Markdown

  #30 opened a year ago by egonw
  0

• No ChEBI ID for K atom

  #29 opened a year ago by egonw
  1

• Test for Rhea IDs to MIM-conversion and arrow only

  #20 opened 3 years ago by DeniseSl22
  1

• Test for correct Kegg Pathways identifiers

  #21 opened 3 years ago by egonw
  1

• Exception for nonMetaboliteToMetaboliteConversion test?

  #28 opened a year ago by danidi
  1

• test that needs the instance URL updated to classic.wikipathways.org

  #26 opened a year ago by egonw
  1

• Automated check for IDs with source "other"

  #27 opened a year ago by danidi
  1

• write a test to detected Wikidata identifiers that no longer map #nwobridgedb

  #23 opened 2 years ago by egonw
  4

• check SPARQL query for Pathway DataNodes with WikiPathways Xrefs

  #22 opened 3 years ago by egonw
  4

• Check Entrez-gene test

  #10 opened 4 years ago by DeniseSl22
  1

• GPML DataNodes without a "Type"

  #11 opened 4 years ago by marvinm2
  6

• weird error message

  #19 opened 4 years ago by egonw
  1

• Nested Groups

  #17 opened 4 years ago by ariutta
  0

• Test for only top level ontology tags --> Expert Curation

  #16 opened 4 years ago by DeniseSl22
  1

• check for `NeedsWork` and `Hypothetical` pathways in the analysis collection

  #15 opened 4 years ago by egonw
  1

• Curation Query for Conversions

  #14 opened 5 years ago by RyAMiller
  4

• things cannot be RNA and protein at the same type

  #13 opened 5 years ago by egonw
  0

• GPML interaction anchors without connection

  #12 opened 5 years ago by marvinm2
  1

• Check species mappings genes/proteins

  #9 opened 5 years ago by DeniseSl22
  0

• Accept exemptions as Protein and Metabolite annotation for test "metaboliteAlsoOtherType"

  #8 opened 5 years ago by DeniseSl22
  1

• Check protein-protein conversion: false positive

  #7 opened 5 years ago by DeniseSl22
  1

• Update the HMDB test for outdated identifiers

  #1 opened 6 years ago by egonw
  2

• test for use of CAS 142-10-9

  #6 opened 6 years ago by egonw
  0

• Detect remaining use of Uniprot-SwissProt

  #3 opened 7 years ago by egonw
  1

• Update the wp:Conversion test for gene->protein to suggest wp:TranscriptionTranslation

  #2 opened 7 years ago by egonw
  0