wikipathways/cytoscape-wikipathways-app

Issues

• Search returns no results for some WPIDs

  #139 opened 2 months ago by khanspers
  1

• Java version 8 to 11?

  #128 opened 3 years ago by DeniseSl22
  1

• localRepo should not have BridgeDb

  #136 opened 4 months ago by egonw
  1

• update to BridgeDb 3.0.27

  #137 opened 4 months ago by egonw
  1

• code doesn't compile with pristine repository

  #138 opened 4 months ago by egonw
  0

• Problem importing pathway as pathway in cytoscape 3.7.1

  #106 opened 3 years ago by IreneHemel
  13

• Bug: Importing local gpml file doesn't work unless pathway is first imported from WikiPathways

  #113 opened 4 years ago by khanspers
  4

• Where edges are connected to edges in WikiPathways are not imported correctly into Cytoscape

  #133 opened 2 years ago by kozo2
  0

• Add "multi-omics" column

  #132 opened 3 years ago by DeniseSl22
  0

• Add standardizes metabolite IDs in one column to resolve data mapping issues

  #123 opened 3 years ago by DeniseSl22
  2

• jdom issues for 3.3.10

  #125 opened 3 years ago by DeniseSl22
  4

• Search should give closest match

  #129 opened 3 years ago by DeniseSl22
  0

• Add Rhea column for edges

  #111 opened 5 years ago by DeniseSl22
  1

• update icon in network search bar

  #122 opened 3 years ago by AlexanderPico
  0

• Urgent: Edge Table names are missing

  #107 opened 3 years ago by AlexanderPico
  5

• Fix SIF export to make it possible to export from a pathway imported as network

  #114 opened 4 years ago by khanspers
  0

• 3.3.8: Network view is frozen after pathway import

  #118 opened 3 years ago by khanspers
  13

• Ensembl mapping column not added in 3.3.8

  #119 opened 3 years ago by AlexanderPico
  2

• Style is corrupted in 3.3.8

  #121 opened 3 years ago by AlexanderPico
  1

• Importing a pathway as a network: missing in 3.3.8

  #120 opened 3 years ago by dygdedesener
  3

• Node and Edge States, Comments and Literature Refs Should be Imported in New Columns

  #91 opened 6 years ago by AlexanderPico
  2

• Major Issue: Export to CX bug

  #102 opened 3 years ago by ariutta
  9

• Features to keep in unreleased work

  #117 opened 3 years ago by ariutta
  1

• Centripetal Catmull-Rom spline for curve edges?

  #115 opened 4 years ago by ariutta
  9

• group labels not shown by default

  #97 opened 6 years ago by mkutmon
  2

• Add new WPs logo in app

  #109 opened 5 years ago by DeniseSl22
  0

• Add ChEBI column to all imported pathways

  #110 opened 5 years ago by AlexanderPico
  2

• Allow PWs to be linked to base-64 encoded image

  #112 opened 5 years ago by DeniseSl22
  4

• can't open GPML files from file system

  #83 opened 5 years ago by AdamStuart
  9

• Ensembl mapping during import not working completely

  #108 opened 5 years ago by khanspers
  2

• Map Metabolite annotations to Wikidata

  #104 opened 5 years ago by ariutta
  3

• Some pathways not loading with 3.3.76

  #103 opened 6 years ago by ariutta
  4

• Need command for import-from-file

  #98 opened 6 years ago by AlexanderPico
  3

• Errors with Cytosacpe 3.8.0-SNAPSHOT

  #99 opened 6 years ago by AlexanderPico
  5

• WP255 missing Ensembl mapped column

  #89 opened 6 years ago by AlexanderPico
  4

• Brace Shape should be open

  #105 opened 6 years ago by ariutta
  1

• Metadata into Network Table

  #101 opened 6 years ago by ariutta
  3

• Literature Citations

  #96 opened 6 years ago by AlexanderPico
  1

• HTTPS

  #92 opened 6 years ago by AlexanderPico
  0

• Remove KEGG

  #93 opened 6 years ago by AlexanderPico
  1

• Check out new addAnnotations() method via Mike

  #82 opened 6 years ago by AlexanderPico
  0

• Fake ports in Cytoscape

  #95 opened 6 years ago by AlexanderPico
  0

• GPML Labels should be CyAnnotations

  #100 opened 6 years ago by ariutta
  1

• Double membrane shapes

  #94 opened 6 years ago by ariutta
  1

• Phosphorylation states lost in import-as-network

  #90 opened 6 years ago by AdamStuart
  0

• WP255 gets stuck before loading is complete

  #88 opened 6 years ago by AlexanderPico
  0

• empty node table and missing names in edge table

  #84 opened 6 years ago by AlexanderPico
  2

• style properties missing from import-as-network

  #86 opened 6 years ago by AlexanderPico
  1

• Shape annotations should be on background canvas

  #87 opened 6 years ago by AlexanderPico
  1

• Missing ensembl mapping with import-as-network

  #85 opened 6 years ago by AlexanderPico
  1