winglet0996

winglet0996's Stars

• qupath/qupath

  QuPath - Open-source bioimage analysis for research

  Language:Java1.1k282

• MouseLand/cellpose

  a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

  Language:Jupyter Notebook1.4k403

• Project-MONAI/MONAILabel

  MONAI Label is an intelligent open source image labeling and learning tool.

  Language:Python627196

• IOBR/IOBR

  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

  Language:R20453

• mildpiggy/DEP2

  An r package for proteomics data Analysis, developed from DEP.

  Language:R184

• YuLab-SMU/clusterProfiler

  :bar_chart: A universal enrichment tool for interpreting omics data

  Language:R1k256

• broadinstitute/infercnv

  Inferring CNV from Single-Cell RNA-Seq

  Language:R575166

• JonathanShor/DoubletDetection

  Doublet detection in single-cell RNA-seq data.

  Language:Jupyter Notebook8623

• Valdes-Tresanco-MS/gmx_MMPBSA

  gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.

  Language:Python22967

• huggingface/transformers

  🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

  Language:Python136k27.2k

• ml4bio/RNA-FM

  Nature Methods: RNA foundation model (together with RhoFold)

  Language:Jupyter Notebook21223

• pytorch/pytorch

  Tensors and Dynamic neural networks in Python with strong GPU acceleration

  Language:Python84.6k22.8k

• d2l-ai/d2l-zh

  《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。

  Language:Python64k11.1k

• computationalpathologygroup/ASAP

  Program for the analysis and visualization of whole-slide images in digital pathology

  Language:C++620165

• libvips/pyvips

  python binding for libvips using cffi

  Language:Python64950

• phbradley/conga

  Clonotype Neighbor Graph Analysis

  Language:Jupyter Notebook8219

• neutrinolabs/xrdp

  xrdp: an open source RDP server

  Language:C5.8k1.7k

• sddm/sddm

  QML based X11 and Wayland display manager

  Language:C++1.9k333

• deeptools/deepTools

  Tools to process and analyze deep sequencing data.

  Language:Python685213

• arq5x/bedtools2

  bedtools - the swiss army knife for genome arithmetic

  Language:C941287

• biod/sambamba

  Tools for working with SAM/BAM data

  Language:D569105

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k580

• BenLangmead/bowtie2

  A fast and sensitive gapped read aligner

  Language:C++683159

• FelixKrueger/TrimGalore

  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

  Language:Perl472151

• QwenLM/Qwen2.5

  Qwen2.5 is the large language model series developed by Qwen team, Alibaba Cloud.

  Language:Shell10.2k634

• mousepixels/sanbomics_scripts

  scripts and notebooks from sanbomics

  Language:Jupyter Notebook367133

• robbertliu/deeplearning.ai-andrewNG

  deeplearning.ai , By Andrew Ng, All slide and notebook + data + solutions and video link

  Language:Jupyter Notebook1.4k543

• scverse/squidpy

  Spatial Single Cell Analysis in Python

  Language:Python44382

• d2l-ai/d2l-en

  Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

  Language:Python24.1k4.4k

• 3b1b/manim

  Animation engine for explanatory math videos

  Language:Python71.4k6.3k