wirawara/BgeeDB

Parsing of annotation

julien-roux opened this issue · 1 comments

julien-roux commented

It would be nice to have a function allowing to easily parse the Affymetrix and RNA-seq annotations data frames. For example it might be super useful to:

  • query tissues and stages IDs using free-text strings
  • for a given stage or organ ID, retrieve all children stages or organs
  • retrieve samples annotated to a given tissues, including or not its sub-structures
julien-roux commented

Added BgeeDB/BgeeDB_R#7

-> Closing this issue here