Matlab (R2021a) crashes when running flowacc
Closed this issue · 3 comments
Hi Wolfgang,
I've updated Matlab's version recently and it is crashing as soon as I run the flowacc function.
FD=FLOWobj(DEM,'preprocess','carve'); %runs ok
A=flowacc(FD); %crashes
Seems like it might have something to do with the mex files (see below)? Not sure.
Can you help?
Thank you.
Pedro
Here is the crash report:
MATLAB Log File: /Users/pedroval/matlab_crash_dump.51070-1
MATLAB Log File
Segmentation violation detected at 2021-10-09 19:46:24 -0300
Configuration:
Crash Decoding : Disabled - No sandbox or build area path
Crash Mode : continue (default)
Default Encoding : UTF-8
Deployed : false
Graphics Driver : Unknown hardware
Java Version : Java 1.8.0_202-b08 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
MATLAB Architecture : maci64
MATLAB Entitlement ID : 9473646
MATLAB Root : /Applications/MATLAB_R2021a.app
MATLAB Version : 9.10.0.1739362 (R2021a) Update 5
OpenGL : hardware
Operating System : Mac OS Version 10.14.6 (Build 18G9323)
Process ID : 51070
Processor ID : x86 Family 6 Model 58 Stepping 9, GenuineIntel
Session Key : a0a57d38-b8a2-4dd1-9f6e-134555603812
Window System : Quartz
Fault Count: 1
Abnormal termination:
Segmentation violation
Current Thread: 'MCR 0 interpreter thread' id 0x700010a2d000
Register State (from fault):
RAX = 00000001d5d61020 RBX = 0093184b0092fb7e
RCX = 0000000000000001 RDX = 0000000000000000
RSP = 0000700010a29d60 RBP = 0000700010a29da0
RSI = 0000000000000000 RDI = 0093184a00931849
R8 = 0000000000000000 R9 = 0000000018e70000
R10 = 0000000000000003 R11 = 0000000000000007
R12 = 0000000243951020 R13 = 0000700010a2a418
R14 = 0000000211c71020 R15 = 00000000031a1802
RIP = 000000011ca4ee38 RFL = 0000000000010246
CS = 000000000000002b FS = 0000000000000000 GS = 0000000000000000
Stack Trace (from fault):
[ 0] 0x000000010385e549 /Applications/MATLAB_R2021a.app/bin/maci64/libmwfl.dylib+00005449 _ZN10foundation4core4diag15stacktrace_base7captureERKNS1_14thread_contextEm+00000057
[ 1] 0x0000000103863eea /Applications/MATLAB_R2021a.app/bin/maci64/libmwfl.dylib+00028394 _ZN10foundation4core4test17terminate_handledERKNSt3__112basic_stringIcNS2_11char_traitsIcEENS2_9allocatorIcEEEE+00011562
[ 2] 0x0000000103860ec5 /Applications/MATLAB_R2021a.app/bin/maci64/libmwfl.dylib+00016069 _ZN10foundation4core4diag13terminate_logEPKcPK17__darwin_ucontext+00000149
[ 3] 0x0000000108dadb7b /Applications/MATLAB_R2021a.app/bin/maci64/libmwmcr.dylib+00555899 _Z19mnPrintErrorMessageRKNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEEE+00013051
[ 4] 0x0000000108dab64d /Applications/MATLAB_R2021a.app/bin/maci64/libmwmcr.dylib+00546381 _Z19mnPrintErrorMessageRKNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEEE+00003533
[ 5] 0x0000000108da8dd0 /Applications/MATLAB_R2021a.app/bin/maci64/libmwmcr.dylib+00536016 mnFatalSignalHandler+00000144
[ 6] 0x00007fff7b89bb5d /usr/lib/system/libsystem_platform.dylib+00019293 _sigtramp+00000029
[ 7] 0x00000001034d055a /Applications/MATLAB_R2021a.app/bin/maci64/libmwms.dylib+00718170 _ZN10foundation7msg_svc8exchange19NoQueueMessageQueue6submitERKN7mwboost10shared_ptrIKNS1_8EnvelopeEEE+00000074
[ 8] 0x000000010991ba37 /Applications/MATLAB_R2021a.app/bin/maci64/libmex.dylib+00395831 ZNK18C_DispatchStrategy8dispatchEiPP11mxArray_tagiS2+00000279
[ 9] 0x000000010991b970 /Applications/MATLAB_R2021a.app/bin/maci64/libmex.dylib+00395632 ZNK18C_DispatchStrategy8dispatchEiPP11mxArray_tagiS2+00000080
[ 10] 0x000000010991b7dc /Applications/MATLAB_R2021a.app/bin/maci64/libmex.dylib+00395228 ZN7Mfh_mex30dispatch_file_with_protectionsEiPP11mxArray_tagiS2+00000428
[ 11] 0x00000001099001f6 /Applications/MATLAB_R2021a.app/bin/maci64/libmex.dylib+00283126 ZN7Mfh_mex13dispatch_fileEiPP11mxArray_tagiS2+00000150
[ 12] 0x0000000108f0a0ad /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_dispatcher.dylib+00676013 ZN8Mfh_file20dispatch_file_commonEMS_FviPP11mxArray_tagiS2_EiS2_iS2+00000141
[ 13] 0x0000000108f0a8a9 /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_dispatcher.dylib+00678057 ZN8Mfh_file8dispatchEiPNSt3__110unique_ptrI11mxArray_tagN6matrix6detail17mxDestroy_deleterEEEiPPS2+00000377
[ 14] 0x000000010aeb8c09 /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+06798345 _ZN9MathWorks3lxe13LxeDispatcher12apply_handleEPNS0_29DispatcherFunctionHandleTokenEmPNS0_6xvalueEmPKS4_RKNS0_12LxeTypesBaseENS0_9ApplyTypeE+00001337
[ 15] 0x000000010affcf72 /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+08126322 ZN9MathWorks3lxe12apply_handleEPvNS_2ts4TypeEPKvS1_S1+00000386
[ 16] 0x000000010af44a2e /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+07371310 ZN9MathWorks3lxe38cpp_primitive_template_fn_with_contextIXadL_ZNS0_12apply_handleEPvNS_2ts4TypeEPKvS2_S2_EEEEbS2_S4_S6_S2_S2+00000014
[ 17] 0x000000010aa1767b /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+01943163 ZN9MathWorks3lxe13IrInterpreter17ApplyCppPrimitiveEPN2ir4termES4_RKNS_2ts4TypeES8+00000603
[ 18] 0x000000010aa1637f /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+01938303 _ZN9MathWorks3lxe13IrInterpreter31process_application_of_constantEPN2ir4termE+00003951
[ 19] 0x000000010aa13f08 /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+01928968 _ZN9MathWorks3lxe13IrInterpreter13applyConstantEPN2ir4termE+00000072
[ 20] 0x000000010aa0edc8 /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+01908168 _ZN9MathWorks3lxe12IRTreeWalker11getNextIRPCENS0_9irpc_typeE+00000216
[ 21] 0x000000010aa13c87 /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+01928327 ZN9MathWorks3lxe13IrInterpreter9tree_walkERKNS0_9irpc_typeES4+00000215
[ 22] 0x000000010aa13b5c /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+01928028 _ZN9MathWorks3lxe13IrInterpreter9InterpretEv+00000108
[ 23] 0x000000010ab67d40 /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+03321152 _ZN9MathWorks3lxe15ExecutionDriver9ThreadRunEv+00005504
[ 24] 0x000000010ab6d31d /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+03343133 ZN9MathWorks3lxe12IrEngineImpl5ApplyERKN2ir4termEPvS6+00000301
[ 25] 0x000000010adb1817 /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+05720087 ZN9MathWorks3lxe17IrEngineDecorator5ApplyERKN2ir4termEPvS6+00000103
[ 26] 0x000000010ad42a36 /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+05265974 _ZN9MathWorks3lxe9Evaluator15ApplyStatementsERKNSt3__112basic_stringIDsNS2_11char_traitsIDsEENS2_9allocatorIDsEEEERKN2ir4termERNS0_18IEvaluationContextE+00000758
[ 27] 0x000000010ad46bcc /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+05282764 _ZN9MathWorks3lxe9Evaluator17EvalStatementImplERKNSt3__112basic_stringIDsNS2_11char_traitsIDsEENS2_9allocatorIDsEEEERNS0_18IEvaluationContextE+00000412
[ 28] 0x000000010adfd317 /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+06030103 _ZN9MathWorks3lxe9LxeBridge7EvalCmdERKNSt3__112basic_stringIDsNS2_11char_traitsIDsEENS2_9allocatorIDsEEEEbNS0_10EvalSourceE+00000327
[ 29] 0x000000010adfd185 /Applications/MATLAB_R2021a.app/bin/maci64/libmwm_lxe.dylib+06029701 _ZN9MathWorks3lxe9LxeBridge22EvalCmdWithLocalReturnERKNSt3__112basic_stringIDsNS2_11char_traitsIDsEENS2_9allocatorIDsEEEEPibNS0_10EvalSourceE+00000053
[ 30] 0x0000000108c8385b /Applications/MATLAB_R2021a.app/bin/maci64/libmwiqm.dylib+00518235 _ZN3iqm14UserEvalPlugin7executeEP15inWorkSpace_tag+00000939
[ 31] 0x0000000130c4b57a /Applications/MATLAB_R2021a.app/bin/maci64/libnativejmi.dylib+00103802 _ZN9nativejmi17JmiUserEvalPlugin7executeEP15inWorkSpace_tag+00000026
[ 32] 0x0000000108c593f7 /Applications/MATLAB_R2021a.app/bin/maci64/libmwiqm.dylib+00345079 _ZN3iqm17DefaultPacketInfo7executeEP15inWorkSpace_tagN7mwboost10shared_ptrINS_22IntermediatePacketInfoEEEN6mlutil14cmddistributor13WhenToDequeue13WhenToDequeueE+00001479
[ 33] 0x0000000108c6db85 /Applications/MATLAB_R2021a.app/bin/maci64/libmwiqm.dylib+00428933 _ZN3iqm10ioreadline14EvalPacketInfo7executeEP15inWorkSpace_tagN7mwboost10shared_ptrINS_22IntermediatePacketInfoEEEN6mlutil14cmddistributor13WhenToDequeue13WhenToDequeueE+00000085
[ 34] 0x0000000108c1209e /Applications/MATLAB_R2021a.app/bin/maci64/libmwiqm.dylib+00053406 _ZN3iqm10DefaultIqm7dequeueERKN7mwboost8optionalIKP15inWorkSpace_tagEEN14cmddistributor11IqmStreamIDERKNS1_9function2IN6mlutil14cmddistributor17inExecutionStatusERKNSt3__112basic_stringIDsNSF_11char_traitsIDsEENSF_9allocatorIDsEEEES5_EE+00004318
[ 35] 0x000000010987f1f1 /Applications/MATLAB_R2021a.app/bin/maci64/libmwbridge.dylib+00057841 _Z10ioReadLinebP7__sFILERKN7mwboost8optionalIKP15inWorkSpace_tagEEbRbRKNS1_9function2IN6mlutil14cmddistributor17inExecutionStatusERKNSt3__112basic_stringIDsNSE_11char_traitsIDsEENSE_9allocatorIDsEEEES5_EE+00000209
[ 36] 0x0000000109886b42 /Applications/MATLAB_R2021a.app/bin/maci64/libmwbridge.dylib+00088898 _Z22mnGetCommandLineBufferbRbN7mwboost8optionalIKP15inWorkSpace_tagEEbRKNS0_9function2IN6mlutil14cmddistributor17inExecutionStatusERKNSt3__112basic_stringIDsNSA_11char_traitsIDsEENSA_9allocatorIDsEEEES4_EE+00000274
[ 37] 0x0000000109887085 /Applications/MATLAB_R2021a.app/bin/maci64/libmwbridge.dylib+00090245 _Z8mnParserv+00000357
[ 38] 0x0000000108d6c98c /Applications/MATLAB_R2021a.app/bin/maci64/libmwmcr.dylib+00289164 _ZN3mcr7runtime13initializeIqmERKN6mlutil10contextmgr5McrIDE+00002172
[ 39] 0x0000000108d368a5 /Applications/MATLAB_R2021a.app/bin/maci64/libmwmcr.dylib+00067749 _ZN14cmddistributor15PackagedTaskIIP13getTypeStringIvEENSt3__112basic_stringIcNS2_11char_traitsIcEENS2_9allocatorIcEEEEv+00000837
[ 40] 0x0000000108d367e9 /Applications/MATLAB_R2021a.app/bin/maci64/libmwmcr.dylib+00067561 _ZN14cmddistributor15PackagedTaskIIP13getTypeStringIvEENSt3__112basic_stringIcNS2_11char_traitsIcEENS2_9allocatorIcEEEEv+00000649
[ 41] 0x0000000108c7e872 /Applications/MATLAB_R2021a.app/bin/maci64/libmwiqm.dylib+00497778 _ZN3iqm18PackagedTaskPlugin7executeEP15inWorkSpace_tag+00000082
[ 42] 0x0000000108d6a1ce /Applications/MATLAB_R2021a.app/bin/maci64/libmwmcr.dylib+00278990 _Z15mcr_initialize0PKDsPS0_RKN7mwboost10shared_ptrIN10foundation7msg_svc8eventmgr8EventMgrEEEN6mlutil10contextmgr5MvmIDE+00023038
[ 43] 0x0000000108c593f7 /Applications/MATLAB_R2021a.app/bin/maci64/libmwiqm.dylib+00345079 _ZN3iqm17DefaultPacketInfo7executeEP15inWorkSpace_tagN7mwboost10shared_ptrINS_22IntermediatePacketInfoEEEN6mlutil14cmddistributor13WhenToDequeue13WhenToDequeueE+00001479
[ 44] 0x0000000108c20229 /Applications/MATLAB_R2021a.app/bin/maci64/libmwiqm.dylib+00111145 _ZN3iqm10DefaultIqm13dequeueHelperEN7mwboost8optionalImEERKNSt3__112basic_stringIDsNS4_11char_traitsIDsEENS4_9allocatorIDsEEEEN6mlutil14cmddistributor13WhenToDequeue13WhenToDequeueERKNS4_8functionIFbRKNS4_5tupleIJSG_NS1_10shared_ptrINS_22IntermediatePacketInfoEEESA_SA_NS4_10shared_ptrIN14cmddistributor16CoalesceableDataEEEEEEEEE+00001257
[ 45] 0x0000000108c12d8f /Applications/MATLAB_R2021a.app/bin/maci64/libmwiqm.dylib+00056719 _ZN3iqm10DefaultIqm7dequeueEN6mlutil14cmddistributor13WhenToDequeue13WhenToDequeueEN7mwboost8optionalImEE+00000655
[ 46] 0x0000000108d559c3 /Applications/MATLAB_R2021a.app/bin/maci64/libmwmcr.dylib+00195011 _ZN3mcr7runtime22InterpreterThreadMulti14process_eventsEv+00000195
[ 47] 0x0000000108d56320 /Applications/MATLAB_R2021a.app/bin/maci64/libmwmcr.dylib+00197408 _ZN3mcr7runtime22InterpreterThreadMulti10threadMainENSt3__18functionIFvvEEENS2_7promiseIvEE+00000672
[ 48] 0x0000000108d57791 /Applications/MATLAB_R2021a.app/bin/maci64/libmwmcr.dylib+00202641 _ZN3mcr7runtime22InterpreterThreadMulti10threadMainENSt3__18functionIFvvEEENS2_7promiseIvEE+00005905
[ 49] 0x00000001013e1a98 /Applications/MATLAB_R2021a.app/bin/maci64/libmwboost_thread.dylib+00010904 _ZN7mwboost6thread21start_thread_noexceptEv+00000312
[ 50] 0x00007fff7b8a42eb /usr/lib/system/libsystem_pthread.dylib+00013035 _pthread_body+00000126
[ 51] 0x00007fff7b8a7249 /usr/lib/system/libsystem_pthread.dylib+00025161 _pthread_start+00000066
[ 52] 0x00007fff7b8a340d /usr/lib/system/libsystem_pthread.dylib+00009229 thread_start+00000013
This error was detected while a MEX-file was running. If the MEX-file
is not an official MathWorks function, please examine its source code
for errors. Please consult the External Interfaces Guide for information
on debugging MEX-files.
Hi Pedro,
this seems to be an issue with the latest MAC operating system. People found a solution here: #19
Hope it works for you. Let me know if it doesn't.
Cheers, Wolfgang
Hi Wolfgang,
Thank you for the reply. I didn't see that previous issue, sorry and thanks for pointing it out.
Dirk's solution to comment out the lines that use the mex functions worked for me.
Thanks again!
cheers
Pedro