Pinned Repositories
aldy
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
arriba
Fast and accurate gene fusion detection from RNA-Seq data
ASNEO
Circular-Binary-Segmentation
CNVnator
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
complex-upset
A library for creating complex UpSet plots with ggplot2 geoms
data-science-at-the-command-line
Data Science at the Command Line
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
kraken2
The second version of the Kraken taxonomic sequence classification system
xiaobo199405's Repositories
xiaobo199405/kraken2
The second version of the Kraken taxonomic sequence classification system
xiaobo199405/aldy
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
xiaobo199405/arriba
Fast and accurate gene fusion detection from RNA-Seq data
xiaobo199405/ASNEO
xiaobo199405/CNVnator
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
xiaobo199405/complex-upset
A library for creating complex UpSet plots with ggplot2 geoms
xiaobo199405/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
xiaobo199405/DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
xiaobo199405/dualmarker
R package for data visulization and exploration of dual biomarkers
xiaobo199405/FusionInspector
FusionInspector code
xiaobo199405/ggheatmap
ggplot2 version of heatmap
xiaobo199405/HaplotypeTools
A toolkit for identifying recombination and recombinant genotypes
xiaobo199405/HLA-LA
Fast HLA type inference from whole-genome data
xiaobo199405/InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
xiaobo199405/leetcode
Python & JAVA Solutions for Leetcode
xiaobo199405/mrlocus
Mendelian Randomization of gene expression (exposure) on GWAS traits (outcome). See website for software usage guide:
xiaobo199405/neoflow
NeoFlow: a proteogenomics pipeline for neoantigen discovery
xiaobo199405/NeoPredPipe
Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
xiaobo199405/OptiType
Precision HLA typing from next-generation sequencing data
xiaobo199405/panclassif
A method to improve TCGA pancancer classifiers performance
xiaobo199405/pkuseg-python
pkuseg多领域中文分词工具; The pkuseg toolkit for multi-domain Chinese word segmentation
xiaobo199405/rmats-turbo
xiaobo199405/rmats2sashimiplot
xiaobo199405/RNAi-designer
GUI toolkit for siRNA design.
xiaobo199405/ScanExitron
A computational workflow for exitron splicing identification
xiaobo199405/scripts
Bioinformatics projects and code shared by Zhi John Lu
xiaobo199405/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
xiaobo199405/siRNAdesigner
python script that picks suitable targets for siRNA with off-target optimization
xiaobo199405/streamlit-aggrid
Implementation of Ag-Grid component for Streamlit
xiaobo199405/vt
A tool set for short variant discovery in genetic sequence data.