xuzhougeng

xuzhougeng's Stars

• aaronsw/html2text

  Convert HTML to Markdown-formatted text.

  Language:Python2.7k414

• elliotgao2/tomd

  Convert HTML to Markdown.

  Language:Python53171

• shaoanlu/faceswap-GAN

  A denoising autoencoder + adversarial losses and attention mechanisms for face swapping.

  Language:Jupyter Notebook3.4k840

• ruanjue/wtdbg2

  Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

  Language:C51495

• tangerzhang/ALLHiC

  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

  Language:Perl17539

• wangzheng0822/algo

  数据结构和算法必知必会的50个代码实现

  Language:Python23k7.1k

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.9k508

• NLKNguyen/alpine-mpich

  MPI Cluster Automation Solution using Docker, based on Alpine Linux with MPICH (see IEEE paper)

  Language:Shell13556

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.3k731

• eggnogdb/eggnog-mapper

  Fast genome-wide functional annotation through orthology assignment

  Language:Python577106

• kaiye/kaiye.github.com

  微信关注订阅号：猫哥学前班

  Language:HTML695100

• trinityrnaseq/trinityrnaseq

  Trinity RNA-Seq de novo transcriptome assembly

  Language:Perl841320

• tmux/tmux

  tmux source code

  Language:C35.9k2.1k

• Magdoll/Cogent

  Coding Genome Reconstruction using Iso-Seq data

  Language:Python6017

• EI-CoreBioinformatics/mikado

  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

  Language:Python9818

• walaj/SeqLib

  C++ htslib/bwa-mem/fermi interface for interrogating sequence data

  Language:C++13336

• biogo/hts

  biogo high throughput sequencing repository

  Language:Go12541

• tanghaibao/jcvi

  Python library to facilitate genome assembly, annotation, and comparative genomics

  Language:Python775189

• mummer4/mummer

  Mummer alignment tool

  Language:C++476108

• broadinstitute/pilon

  Pilon is an automated genome assembly improvement and variant detection tool

  Language:Scala34460

• vibansal/HapCUT2

  software tools for haplotype assembly from sequence data

  Language:C21436

• PacificBiosciences/pb-assembly

  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out

  Language:Python11340

• envmodules/modules

  Environment Modules: provides dynamic modification of a user's environment

  Language:Tcl731112

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.3k160

• Gabaldonlab/redundans

  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

  Language:C++13420

• cole-trapnell-lab/monocle-release

  Language:R282116

• agitter/single-cell-pseudotime

  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

  41362

• cdoco/awesome-linux-zh

  🐧 适用于 Linux 下的应用程序，软件，工具和其他材料

  11415

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.3k995

• schatzlab/appliedgenomics2018

  Materials for Spring 2018 Applied Genomics Course

  Language:Jupyter Notebook7730