install of CEL-Seq-pipeline

[yueli8]

Hello,

Thank you so much for developing so nice software!

I downloaded CEL-Seq-pipeline-stable.zip from https://github.com/yanailab/CEL-Seq-pipeline
unzipped.

li@lx:~/CEL-Seq-pipeline-stable$ python pijpleiding.py --help
Traceback (most recent call last):
  File "pijpleiding.py", line 31, in <module>
    import bowtie_wrapper, bc_demultiplex, htseq_wrapper, clean_up
  File "/home/li/CEL-Seq-pipeline-stable/bc_demultiplex.py", line 22, in <module>
    from HTSeq import FastqReader, SequenceWithQualities
ImportError: No module named HTSeq
avilion-Desktop-59

My python version is:

Python 2.7.15+

I worked in Ubuntu system.

Thank you in advance for your great help and I really appreciated！

Best,

Yue

[yueli8]

li@0xxx:~$ sudo apt-get install build-essential python2.7-dev python-numpy python-matplotlib python-pysam python-htseq

[Puriney]

If possible, could you use conda or pip to install HTSeq instead? It seems your system did not find the path to HTSeq.

https://github.com/simon-anders/htseq