A Snakemake workflow for snakemap
A snakemake workflow for read-mapping against the contig catalogue from metagenomics by illumina and nanopore
- Init
python init.py -i /path/to/illumina_fqs -n /path/to/nanopore_fqs -w /path/to/workdir
- Run
snakemake all -j6 --snakefile /path/to/Snakefile --configfile /path/to/config.yaml --directory /path/to/workdir --use-conda