/phy_plugins

Plugins for the manual spike sorting program phy

Primary LanguagePython

How to use the plugins?

  • Clone the repository

  • Add the path to the location to ~/.phy/phy_config.py

    c.Plugins.dirs = [r'/home/ycan/.phy/plugins', r'/home/ycan/repos/phy_plugins']

  • To activate each plugin, add its name to the plugin list in the same file

    c.TemplateGUI.plugins = ['MEAColumns', <more plugins here>]

    When you pull from the repository, you need to repeat this step to activate the new plugins.

  • Relaunch phy

Notes

  • You should remove duplicate plugins in the ~/.phy/plugins folder, otherwise the loading might go wrong.
  • Some plugins might require additional packages to be installed, check the import statements if you're unable to run a plugin.
  • To get more verbose output, phy can be ran with the debug option. 
    phy template-gui --debug params.py

References

Recluster and SplitShortISI were modified and copied from https://doi.org/10.5281/zenodo.3367782.