yfukasawa/LongQC

Issue with running LongQC

shivvratjha opened this issue · 0 comments

@yfukasawa Hello Sir,
I find LongQC description valuable to me so i downloaded and installed it and required programs. But i am facing problem with it's run command
"sudo docker run -it -v YOUR_INPUT_DIR:/input -v YOUR_OUTPUT_DIR:/output longqc sampleqc -x pb-sequel -p 20 -o /output/YOUR_SAMPLE_NAME input/YOUR_INPUT_READ_FILE "
"sudo docker run -it -v YOUR_INPUT_DIR:/input -v YOUR_OUTPUT_DIR:/output longqc sampleqc -x pb-sequel -p 20 -o /output/YOUR_SAMPLE_NAME input/YOUR_INPUT_READ_FILE
Error: input file input/YOUR_INPUT_READ_FILE does not exist."

I keep getting this error. Please let me know if i am putting any wrong command otherwise what could else be the problem.

Thanks,
Shivvrat