ymatsunaga

ymatsunaga's Stars

• tensorflow/tensorflow

  An Open Source Machine Learning Framework for Everyone

  Language:C++187k74.4k

• spartan-array/spartan

  Distributed Numpy

  Language:Python14822

• matze/mtheme

  A modern LaTeX Beamer theme

  Language:TeX6.5k845

• munki/munki

  Managed software installation for macOS —

  Language:Python3.2k347

• gfrd/egfrd

  enhanced Green's Function Reaction Dynamics

  Language:C++911

• brycecr/msmexplorer

  MSMExplorer is a visualization system for markov state models for protein folding networks

  Language:Java138

• chainer/chainer

  A flexible framework of neural networks for deep learning

  Language:Python5.9k1.4k

• chokkan/liblbfgs

  libLBFGS: a library of Limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS)

  Language:C564193

• stephenbeckr/L-BFGS-B-C

  L-BFGS-B, converted from Fortran to C, with Matlab wrapper

  Language:C11057

• PRML/PRMLT

  Matlab code of machine learning algorithms in book PRML

  Language:MATLAB6k2.2k

• minepy/minepy

  minepy - Maximal Information-based Nonparametric Exploration

  Language:C21746

• rasmusbergpalm/DeepLearnToolbox

  Matlab/Octave toolbox for deep learning. Includes Deep Belief Nets, Stacked Autoencoders, Convolutional Neural Nets, Convolutional Autoencoders and vanilla Neural Nets. Each method has examples to get you started.

  Language:Matlab3.8k2.3k

• markovmodel/pytram

  The pytram package is deprecated and no longer supported. We recommend to switch to PyEMMA

  Language:Python92

• prody/ProDy

  A Python Package for Protein Dynamics Analysis

  Language:Python439158

• altmany/export_fig

  A MATLAB toolbox for exporting publication quality figures

  Language:MATLAB1.3k369

• Electrostatics/apbs-pdb2pqr

  APBS - software for biomolecular electrostatics and solvation

  12762

• FDPS/FDPS

  Github repository for FDPS

  Language:C++8425

• t-/amber-dyes

  AMBER DYES Force Field

  53

• choderalab/pymbar

  Python implementation of the multistate Bennett acceptance ratio (MBAR)

  Language:Python24092

• plumed/plumed2

  Development version of plumed 2

  Language:C++396296

• mdtraj/mdtraj

  An open library for the analysis of molecular dynamics trajectories

  Language:Python605280

• NVIDIA/DIGITS

  Deep Learning GPU Training System

  Language:HTML4.1k1.4k

• stan-dev/stan

  Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.

  Language:C++2.6k371

• ihaque/memtestG80

  CUDA-based memory tester for NVIDIA GPUs

  Language:C++8117

• Pymol-Scripts/Pymol-script-repo

  Collected scripts for Pymol

  Language:Python452258