ys-zong/MEDFAIR

Clarification on Dataset Name for OL3I Opportunistic L3 CT Slices

Opened this issue · 4 comments

miladmasroor commented

Hello,

In your paper, you mentioned using the "OL3I Opportunistic L3 computed tomography slices" dataset. However, I am having difficulty identifying which name corresponds to the OL3I dataset in the code snippet provided below:

parser.add_argument('--dataset_name', default='CXP', choices=['CXP', 'NIH', 'MIMIC_CXR', 'RadFusion', 'RadFusion4',
'HAM10000', 'HAM100004', 'Fitz17k', 'OCT', 'PAPILA', 'ADNI', 'ADNI3T', 'COVID_CT_MD','RadFusion_EHR',
'MIMIC_III', 'eICU'])

Could you please clarify which of these options refers to the OL3I dataset? Your guidance would be greatly appreciated to ensure that I use the correct dataset in my experiments.

Thank you for your assistance!

ys-zong commented

HI, I perhaps didn't put the OL3I in the arguments as this dataset was included later. You can feel free to add it yourself and the implementation should be very similar to others.

miladmasroor commented

Thank you for the clarification! I appreciate your response.

miladmasroor commented

To ensure consistency and accuracy, could you please share the notebook or code snippets you used for the pre-processing of the OL3I dataset? This would be incredibly helpful for aligning my implementation with the existing approach.

Thank you again for your support and assistance!

ys-zong commented

This should be also straightforward to implement according to the paper and other pre-processing scripts. Let me know if you have any problems.