yunshengb/SimGNN

Insufficient dataset :(

Opened this issue · 7 comments

LeeJunHyun commented

Hi, @yunshengb . Thank you for sharing your code and dataset.

However, there aren't test data, as mentioned another issue.

And, there are missing file on train set too.

Here is a error message of your code.

FileNotFoundError: [Errno 2] No such file or directory: '/workspace/SimGNN/save/AIDS700nefData_train.pickle'

AIDS700nefData_train.pickle is not in your google drive, https://drive.google.com/drive/folders/1Eusvi4_iOKM0AsO1LhxQFkY62kDEtuMq.

Could you provide proper train & test data?

yunshengb commented

AIDS700nefData_train.pickle is automatically generated by loading gexf graphs from data/. Did you follow the following:

Get the datasets from https://drive.google.com/drive/folders/1lY3pqpnUAK0H9Tgjyh7tlMVYy0gYPthC?usp=sharing and extract under data/:

AIDS80nef
AIDS700nef
linux
IMDBMulti

Thanks!

LeeJunHyun commented

Thanks, @yunshengb !

But I already downloaded dataset and extract at data/.

Is there any step before run python main.py?

  • 😄1
yunshengb commented

Can you paste the complete error message by the code? This way I can better help you fix the issue. Perhaps you need to delete the existing pickle or there is some nested folder. Or it may be some platform-dependent thing which hopefully is not the case :)

Thanks!

  • 👍2
GZYZG commented

Hi, @yunshengb . Thank you for sharing your code and dataset.

However, there aren't test data, as mentioned another issue.

And, there are missing file on train set too.

Here is a error message of your code.

FileNotFoundError: [Errno 2] No such file or directory: '/workspace/SimGNN/save/AIDS700nefData_train.pickle'

AIDS700nefData_train.pickle is not in your google drive, https://drive.google.com/drive/folders/1Eusvi4_iOKM0AsO1LhxQFkY62kDEtuMq.

Could you provide proper train & test data?

I think you did't create save/ folder in this project

yunshengb commented
GZYZG commented

The following data files have been uploaded to the folder you specified: AIDS700nefData_train.pickle AIDS700nefData_test.pickle LinuxData_train.pickle LinuxData_test.pickle IMDBMulti800Data_train.pickle IMDBMulti800Data_test.pickle I believe these are all that are needed. Please let me know what other files are needed. Thanks!
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On Oct 27, 2020, at 22:48, GuoZhiyan @.***> wrote: Hi, @yunshengb https://github.com/yunshengb . Thank you for sharing your code and dataset. However, there aren't test data, as mentioned another issue. And, there are missing file on train set too. Here is a error message of your code. FileNotFoundError: [Errno 2] No such file or directory: '/workspace/SimGNN/save/AIDS700nefData_train.pickle' AIDS700nefData_train.pickle is not in your google drive, https://drive.google.com/drive/folders/1Eusvi4_iOKM0AsO1LhxQFkY62kDEtuMq https://drive.google.com/drive/folders/1Eusvi4_iOKM0AsO1LhxQFkY62kDEtuMq. Could you provide proper train & test data? I think you did't create save/ folder in this project — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#7 (comment)>, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACAAS2E2OEQDJ6LDID3E5ADSM6WBDANCNFSM4HM63ZEQ.

Thanks! But I have another question,. I want to use files in dis_map.zip to replace the computation of ged. But I don't know how to match the .pickle file with different datasets. Could you tell me how to modify your code to use the .pickle files? Thanks!

I got it! But still Thanks!

Lost-little-dinosaur commented

Hi~
I still don't know how to run this code using my own dataset....the pickle file is too complex for me... I will be appreciated if you can help me...