zanderharteveld

zanderharteveld's Stars

• amix/vimrc

  The ultimate Vim configuration (vimrc)

  Language:Vim Script30.8k7785127.3k

• cookiecutter/cookiecutter

  A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.

  Language:Python22.7k2318682k

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python12.9k2278642.3k

• mobile-shell/mosh

  Mobile Shell

  Language:C++12.7k216917743

• conda-forge/miniforge

  A conda-forge distribution.

  Language:Shell6.5k55384331

• KevinMusgrave/pytorch-metric-learning

  The easiest way to use deep metric learning in your application. Modular, flexible, and extensible. Written in PyTorch.

  Language:Python6k62514658

• paperswithcode/releasing-research-code

  Tips for releasing research code in Machine Learning (with official NeurIPS 2020 recommendations)

  2.6k556717

• RosettaCommons/RoseTTAFold

  This package contains deep learning models and related scripts for RoseTTAFold

  Language:Python2k59132440

• RosettaCommons/RFdiffusion

  Code for running RFdiffusion

  Language:Python1.8k42207348

• BradyAJohnston/MolecularNodes

  Toolbox for molecular animations in Blender, powered by Geometry Nodes.

  Language:Python9161932387

• trevismd/statannotations

  add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.

  Language:Python67368174

• molstar/molstar

  A comprehensive macromolecular library

  Language:TypeScript66526735149

• jupyter-vim/jupyter-vim

  Make Vim talk to Jupyter kernels

  Language:Python524137538

• bjing2016/alphaflow

  AlphaFold Meets Flow Matching for Generating Protein Ensembles

  Language:Python37163149

• kalininalab/alphafold_non_docker

  AlphaFold2 non-docker setup

  Language:Shell3431070120

• csurfer/blackcellmagic

  IPython magic command to format python code in cell using black.

  Language:Python306121013

• biolists/folding_tools

  A collection of *fold* tools

  29024633

• dexplo/dataframe_image

  A python package for embedding pandas DataFrames as images into pdf and markdown documents

  Language:Jupyter Notebook282109941

• luost26/diffab

  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)

  Language:Python28142842

• oxpig/ANARCI

  Antibody Numbering and Antigen Receptor ClassIfication

  Language:Python188117392

• jbkinney/logomaker

  Software for the visualization of sequence-function relationships

  Language:Jupyter Notebook18473436

• ChatMol/ChatMol

  ChatMol

  Language:Python1635620

• rifdock/rifdock

  Rifdock Library for Conformational Search

  Language:C++14384640

• EmoryMLIP/DeepGenerativeModelingIntro

  PyTorch Code used in 'Introduction to Deep Generative Modeling'

  Language:Python452110

• MooersLab/pymolsnips

  Pymolsnips is a library of PyMOL scripting language code fragments for several popular text editors.

  Language:Vim Snippet41256

• smsaladi/pymol_viridis

  Colorblind-friendly, perceptually uniform palettes for pymol

  Language:Python18213

• APAJanssen/Alphafold2import

  PyMOL plugin to import Alphafold2 models hosted by EMBL, based on fetch-functionality

  Language:Python17432

• atommoyer/stapler

  A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins

  Language:Python17234

• dzarmola/knot_pull

  Python module for knot-like structure detection in biological molecules

  Language:Python8113

• ulido/pzfx_parser

  Python package to load and parse tables in a Prism pzfx file.

  Language:Python8337