zhk8111

Pinned Repositories

bedtools2
bedtools - the swiss army knife for genome arithmetic
Language:C00
diamond
Accelerated BLAST compatible local sequence aligner.
Language:C++00
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
Language:Perl00
kraken2
The second version of the Kraken taxonomic sequence classification system
Language:C++00
libpll-2
Phylogenetic Likelihood Library 2 - experimental
Language:C00
megahit
Ultra-fast and memory-efficient (meta-)genome assembler
Language:C++00
mixcr
MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.
Language:Java00
modeltest
Best-fit model selection
Language:C++00
msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
Language:C++00
MuPeXI
MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
Language:Python00

zhk8111's Repositories

zhk8111/bedtools2
bedtools - the swiss army knife for genome arithmetic
Language:C00
zhk8111/diamond
Accelerated BLAST compatible local sequence aligner.
Language:C++00
zhk8111/ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
Language:Perl00
zhk8111/kraken2
The second version of the Kraken taxonomic sequence classification system
Language:C++00
zhk8111/libpll-2
Phylogenetic Likelihood Library 2 - experimental
Language:C00
zhk8111/megahit
Ultra-fast and memory-efficient (meta-)genome assembler
Language:C++00
zhk8111/mixcr
MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.
Language:Java00
zhk8111/modeltest
Best-fit model selection
Language:C++00
zhk8111/msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
Language:C++00
zhk8111/MuPeXI
MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
Language:Python00
zhk8111/pll-modules
High Level modules for the Low Level Phylogenetic Likelihood Library
zhk8111/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
Language:Perl1 0
zhk8111/sourcetracker2
SourceTracker2
zhk8111/tensorflow
An Open Source Machine Learning Framework for Everyone
zhk8111/trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
zhk8111/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
zhk8111/vdjtools
Post-analysis of immune repertoire sequencing data
zhk8111/VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)