/nf-subsamplebam

Primary LanguageNextflowBSD 2-Clause "Simplified" LicenseBSD-2-Clause

Simple Nextflow script to subsample a bam file

hardcoded to subsample at 1% level

usage example:

nextflow run nf-subsamplebam/main.nf -with-docker [nextflow-image] --bam1 [path or s3 folder uri] --outdir [path to folder or s3 folder uri]