Pinned Repositories
EF-X-crystal-MD
Setup and analysis of MD simulations mimicking the application of an external electric field to a protein crystal.
cylinter
An Interactive Image Segmentation Filter for Multiplex Microscopy
black-myth-wukong-english-maps
Translations of maps for "Black Myth: Wukong," providing interactive, user-friendly navigation tools for English-speaking players.
CPC
Yet another baseline for our time series pretraining paper (original repo at https://github.com/harkash/contrastive-predictive-coding-for-har)
Listen_and_Rearrange
A demo app built with tkinter for practice listening
mcconv
A general tool for the interconversion between Cartesian and various internal coordinate representations for biomolecules
mdtools
Tools for running MD simulations in OpenMM
Mixup
Fixed the model for "Mixing up contrastive learning: Self-supervised representation learning for time series" and extending to new datasets
SimCLR_TS_baseline
Adapted the model from "Exploring Contrastive Learning in Human Activity Recognition for Healthcare" as a baseline in our current project
TNC_TS_baseline
A modification of the TNC model from "UNSUPERVISED REPRESENTATION LEARNING FOR TIME SERIES WITH TEMPORAL NEIGHBORHOOD CODING" for baseline results to be used in our study
ziyuanzhao2000's Repositories
ziyuanzhao2000/Listen_and_Rearrange
A demo app built with tkinter for practice listening
ziyuanzhao2000/TNC_TS_baseline
A modification of the TNC model from "UNSUPERVISED REPRESENTATION LEARNING FOR TIME SERIES WITH TEMPORAL NEIGHBORHOOD CODING" for baseline results to be used in our study
ziyuanzhao2000/black-myth-wukong-english-maps
Translations of maps for "Black Myth: Wukong," providing interactive, user-friendly navigation tools for English-speaking players.
ziyuanzhao2000/SimCLR_TS_baseline
Adapted the model from "Exploring Contrastive Learning in Human Activity Recognition for Healthcare" as a baseline in our current project
ziyuanzhao2000/CPC
Yet another baseline for our time series pretraining paper (original repo at https://github.com/harkash/contrastive-predictive-coding-for-har)
ziyuanzhao2000/Mixup
Fixed the model for "Mixing up contrastive learning: Self-supervised representation learning for time series" and extending to new datasets
ziyuanzhao2000/Variational_Modeling
Collection of notes and basic model implementations
ziyuanzhao2000/CLOCS_fixed
ziyuanzhao2000/ddg-exercises
Assignments for CMU course on Discrete Differential Geometry (15-458/858)
ziyuanzhao2000/DrugRes_Prediction
ziyuanzhao2000/mcconv
A general tool for the interconversion between Cartesian and various internal coordinate representations for biomolecules
ziyuanzhao2000/mdtools
Tools for running MD simulations in OpenMM
ziyuanzhao2000/cylinter
An Interactive Image Segmentation Filter for Multiplex Microscopy
ziyuanzhao2000/egfp_cluster_scripts
For holding a few scripts used on our FASRC clusters, for the eGFP crystal project.
ziyuanzhao2000/GPT_tutorial
Implementing a GPT model following Andrew Karpathy's excellent Youtube tutorial
ziyuanzhao2000/liquid_studies
MD simulation of various liquids
ziyuanzhao2000/mdtraj
An open library for the analysis of molecular dynamics trajectories
ziyuanzhao2000/muyu
ziyuanzhao2000/MX1_puncta
ziyuanzhao2000/openff-toolkit
The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation available at http://open-forcefield-toolkit.readthedocs.io
ziyuanzhao2000/PDZ_simulation
ziyuanzhao2000/Sandbox
For playing around with models in publications and try to reproduce their results
ziyuanzhao2000/SimTSC
[SDM 2022] Towards Similarity-Aware Time-Series Classification
ziyuanzhao2000/strassen
ziyuanzhao2000/tiatoolbox
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
ziyuanzhao2000/ts2vec_baseline
Modified from "A universal time series representation learning framework" to perform baseline experiments for our project
ziyuanzhao2000/TS_TCC_baseline
Adapted TS_TCC model for baseline experiments
ziyuanzhao2000/virtual_fireplace
A digital art project that simulates burning stuff in a virtual fireplace.
ziyuanzhao2000/ziyuanzhao2000.github.io
Landing page