Pinned Repositories
dyngen
Simulating single-cell data using gene regulatory networks 📠
dynguidelines
Selecting the optimal trajectory inference based on a given dataset and user input 🔮
dynmethods
A collection of 50+ trajectory inference methods within a common interface 📥📤
dyno
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
dynplot
Visualising single-cell trajectories, including comparisons between two models 📈
dynverse
A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
2019-01-14_poster_dynbenchmark
Poster for the Single Cell Biology Keystone meeting, January 13─17, 2019
dyno-workshop-roscoff-2019
triwise
ugentdown
An updated R Markdown thesis template using the bookdown package
zouter's Repositories
zouter/dyno-workshop-roscoff-2019
zouter/ugentdown
An updated R Markdown thesis template using the bookdown package
zouter/2019-01-14_poster_dynbenchmark
Poster for the Single Cell Biology Keystone meeting, January 13─17, 2019
zouter/awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
zouter/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
zouter/ballsorter
zouter/closed-defence
🎓 Presentation for my closed PhD defence
zouter/dynvelocity
zouter/esfiji
Automating common inkscape tasks in R
zouter/eyck
zouter/fenton
zouter/GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
zouter/httpuv
HTTP and WebSocket server package for R
zouter/immunology_2019
zouter/kallistobustools
kallisto|bustools workflow for pre-processing single-cell RNA-seq data
zouter/kerneltree
Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.
zouter/patchwork
The Composer of ggplots
zouter/pkgdown
Generate static html documentation for an R package
zouter/polyptich
zouter/poster-dyno-keystone2019
zouter/qsub
zouter/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
zouter/scVI
Deep generative modeling for single-cell transcriptomics
zouter/single-cell_sib_scilifelab
SIB/Scilifelab autumn school in single cell omics 2019.
zouter/sinto
Tools for single-cell data processing
zouter/sphinx-book-theme
A clean book theme for scientific explanations and documentation with Sphinx
zouter/sphinx-comments
hypothes.is interaction layer with Sphinx
zouter/style
A style guide for the R language
zouter/TI_STREAM
STREAM repo for Topcoder Single-Cell Trajectory Inference Methods challenge https://www.topcoder.com/lp/single-cell
zouter/umapr
UMAP dimensionality reduction in R