/Autoencoders-Combining-Tissues-GTEx

Representing an individual across multiple RNA-seq samples in different tissues

Primary LanguageJupyter NotebookMIT LicenseMIT

Auto-encoders to build an embeddings space for an individual across multi-tissue RNA-seq samples

  • Basic data pre-processing
  • Data loading in torch
  • Set up basic autoencoder
  • Set up basic prediction environment
  • Pre-processing with batch effects
  • Upgraded prediction environment with batch effects removed
  • Transfer learning using other tissues