Pinned Repositories
-Git
零基础使用Git的读书笔记
5years
A-to-Z-Resources-for-Students
✅ Curated list of resources for college students
AHRD
High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
ARACNe-AP
Network Reverse Engineering through AP inference of Mutual Information
Augustus
Genome annotation with AUGUSTUS
labs
Rmd source files for the HarvardX series PH525x
pumpkin-book
《机器学习》（西瓜书）公式推导解析，在线阅读地址：https://datawhalechina.github.io/pumpkin-book
R_bilibili
the-art-of-command-line
Master the command line, in one page
1010stone's Repositories
1010stone/AHRD
High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
1010stone/Augustus
Genome annotation with AUGUSTUS
1010stone/awesome-R
A curated list of awesome R packages, frameworks and software.
1010stone/BnaSNPDB
An interactive web portal for exploring SNPs among 1007 rapeseed germplasm accessions
1010stone/ChIPseeker
:dart:ChIP peak Annotation, Comparison and Visualization
1010stone/clust
Automatic and optimised consensus clustering of one or more heterogeneous datasets
1010stone/clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
1010stone/daily_test
1010stone/EasyMicrobiome
1010stone/eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
1010stone/GAAS
Genome Assembly and Annotation Service code
1010stone/GENIE3_scripts
Scripts used in the manuscript "Validation and characterisation of the wheat GENIE3 network using an independent RNA-Seq dataset." from Harrington et al. 2019
1010stone/genometools
GenomeTools genome analysis system.
1010stone/Genomic_tools
Genomic related tools
1010stone/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
1010stone/grn
Maize Gene regulatory network (MaizeGRN)
1010stone/HuaSmallTools
Some bioinformic domestic scripts.
1010stone/IT_book
本项目收藏这些年来看过或者听过的一些不错的常用的上千本书籍，没准你想找的书就在这里呢，包含了互联网行业大多数书籍和面试经验题目等等。有人工智能系列（常用深度学习框架TensorFlow、pytorch、keras。NLP、机器学习，深度学习等等），大数据系列(Spark,Hadoop,Scala,kafka等)，程序员必修系列（C、C++、java、数据结构、linux，设计模式、数据库等等）
1010stone/jcvi
Python library to facilitate genome assembly, annotation and comparative genomics
1010stone/learning-bioinformatics-at-home
resources for learning bioinformatics
1010stone/Machine-learning-learning-notes
周志华《机器学习》又称西瓜书是一本较为全面的书籍，书中详细介绍了机器学习领域不同类型的算法(例如：监督学习、无监督学习、半监督学习、强化学习、集成降维、特征选择等)，记录了本人在学习过程中的理解思路与扩展知识点，希望对新人阅读西瓜书有所帮助！
1010stone/MicrobiomeProtocol
Microbiome Protocol eBook related documents and scripts.
1010stone/NGS_data_processing
Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
1010stone/Note
1010stone/QIIME2ChineseManual
QIIME 2中文文档(QIIME 2 Chinese Manual)
1010stone/rnaseq
public RNA-Seq datasets
1010stone/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
1010stone/scRNA.seq.course
Analysis of single cell RNA-seq data course
1010stone/SMML-BIO
Statistical Modeling and Machine Learning for Biology
1010stone/WheatHomoeologExpression