14stutzmanav
Genetics & Molecular Bio Ph.D. Candidate & Diversity Excellence in Genetics Fellow at UNC in the @mckaylabunc and @dowenlab labs.
University of North Carolina at Chapel HillNew York, NY
Pinned Repositories
cutNrun-pipeline
Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.
dowen-chip-pipeline
Analysis pipeline for ChIP-seq data- this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf, in the Jill Dowen lab.
hic-pipeline
hic-pipeline-cooler
For generating .cool and .mcool files - this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf.
hic-pipeline-fanc
For generating fanc .hic files - this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf.
hic-pipeline-hicexplorer
For generating .h5 hicExplorer files - this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf.
hicmaptools
repeat-counting
cutNrun-pipeline
Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.
faire-pipeline
14stutzmanav's Repositories
14stutzmanav/cutNrun-pipeline
Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.
14stutzmanav/dowen-chip-pipeline
Analysis pipeline for ChIP-seq data- this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf, in the Jill Dowen lab.
14stutzmanav/hic-pipeline
14stutzmanav/hic-pipeline-cooler
For generating .cool and .mcool files - this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf.
14stutzmanav/hic-pipeline-fanc
For generating fanc .hic files - this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf.
14stutzmanav/hic-pipeline-hicexplorer
For generating .h5 hicExplorer files - this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf.
14stutzmanav/hicmaptools
14stutzmanav/repeat-counting