3dem

Pinned Repositories

datavis
Visualization tools for Scientific Data analysis (e.g Images and Tables)
Language:Python5 9 12
DynaMight
Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset
Language:Python19 7 76
emcore
Basic image processing library for Electron Microscopy
Language:C++5 13 51
emhub
Web application for monitor EM results
Language:Python10 6 213
externprior
RELION external reconstruct functionality
Language:Python11 7 52
model-angelo
Automatic atomic model building program for cryo-EM maps
Language:Python112 8 8418
relion
Image-processing software for cryo-electron microscopy
Language:C++441 51 1.1k194
relion-blush
Blush refinement - For use in RELION-5
Language:Python4 7 02
relion-documents
Documentations for RELION
Language:TeX10 9 49
topaz
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
Language:Jupyter Notebook7 3 02

3dem's Repositories

3dem/relion
Image-processing software for cryo-electron microscopy
Language:C++441 51 1.1k194
3dem/model-angelo
Automatic atomic model building program for cryo-EM maps
Language:Python112 8 8418
3dem/DynaMight
Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset
Language:Python19 7 76
3dem/externprior
RELION external reconstruct functionality
Language:Python11 7 52
3dem/emhub
Web application for monitor EM results
Language:Python10 6 213
3dem/relion-documents
Documentations for RELION
Language:TeX10 9 49
3dem/topaz
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
Language:Jupyter Notebook7 3 02
3dem/datavis
Visualization tools for Scientific Data analysis (e.g Images and Tables)
Language:Python5 9 12
3dem/emcore
Basic image processing library for Electron Microscopy
Language:C++5 13 51
3dem/emtools
Basic utilities for CryoEM data manipulation
Language:Python5 6 11
3dem/relion-classranker
RELION automatic 2D class selection
Language:Python5 5 11
3dem/emtable
Simple module to deal with EM tabular data (aka metadata)
Language:Python4 5 52
3dem/emvis
Visualization tools for EM data analysis (based on datavis)
Language:Python4 9 21
3dem/relion-blush
Blush refinement - For use in RELION-5
Language:Python4 7 02
3dem/em-testdata
EM related files (metadata, image, etc) used for running basic tests
Language:Starlark2 7 01
3dem/emhub-testdata
Some testdata for emhub
1 8 01