Pinned Repositories
4dn-policies
Policies for the NIH Common Fund 4D Nucleome Network.
docker-4dn-hic
Docker for 4DN Hi-C processing pipeline
fourfront
Data portal for submitting and viewing genomic data
hic2cool
Lightweight converter between hic and cool contact matrices.
pairix
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
pairsqc
QC report generator for Hi-C pairs file
pipelines-cwl
Pipelines developed and used by 4DN-DCIC in Common Workflow Language
react-workflow-viz
React component for visualizing CWL-like workflows (and similar data)
Rpairix
R binder for pairix - 2D/1D genomic indexing and querying on bgzipped text file
tibanna
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
4D Nucleome Data Coordination and Integration Center's Repositories
4dn-dcic/pairix
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
4dn-dcic/tibanna
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
4dn-dcic/hic2cool
Lightweight converter between hic and cool contact matrices.
4dn-dcic/docker-4dn-hic
Docker for 4DN Hi-C processing pipeline
4dn-dcic/fourfront
Data portal for submitting and viewing genomic data
4dn-dcic/pipelines-cwl
Pipelines developed and used by 4DN-DCIC in Common Workflow Language
4dn-dcic/react-workflow-viz
React component for visualizing CWL-like workflows (and similar data)
4dn-dcic/foursight
Providing insight into your application using AWS infrastructure.
4dn-dcic/Submit4DN
Developing tools for data submission, curation and control
4dn-dcic/utils
various util modules shared amongst several projects in our organization
4dn-dcic/docker-md5
4dn-dcic/tibanna_ff
This is an extension of Tibanna that integrates with 4DN/CGAP/SMaHT data portals.
4dn-dcic/docker-4dn-RE-checker
4dn-dcic/shared-portal-components
Common components for use by 4DN and CGAP portal(s)
4dn-dcic/docker-4dn-repliseq
Docker for 4DN Repli-seq processing pipeline
4dn-dcic/fish_omics_format
4dn-dcic/foursight-core
4dn-dcic/snovault
The SnoVault general purpose hybrid object-relational database
4dn-dcic/dcicwrangling
4dn-dcic/4dn-cloud-infra
Cloud Formation templates for 4dn-dcic AWS environments
4dn-dcic/Benchmark
4dn-dcic/docker-4dn-bedtomultivec
4dn-dcic/docker-4dn-fastq-first-line
4dn-dcic/docker-4dn-mcoolQC
4dn-dcic/docker-fastqc
4dn-dcic/higlass-docker
Builds a docker container wrapping higlass-server and higlass-client in nginx
4dn-dcic/jupyterhub-docker
4dn-dcic/post-deploy-perf-tests
A collection of performance testing
4dn-dcic/PyVCF
A Variant Call Format reader for Python.
4dn-dcic/snakemake-executor-plugin-tibanna
A Snakemake executor plugin for Amazon AWS workflow exection with tibanna.