/SJM

Primary LanguageC++

Geneplus-Beijing

SJM, Cloned from SJM with the following modifications

  1. remove boost dependency, use embeded CLI instead
  2. remove TCLAP dependency, use std::regex instead
  3. remove perl scripts run_with_env, keep perl scripts away
  4. allow compile and executaion under environment without sge/lfs
  5. support local job submit and monitoring natively if no sge/lfs found

Installation && usage

  1. clone repo
    git clone https://github.com/vanNul/SJM.git
  2. compile
    cd SJM
    ./autogen.sh
    ./configure --prefix=/path/to/install/dir/
    make
    make install
  3. usage
    prepare a sjm jobfile such as example.sjm and run
    sjm example.sjm
    you'd better check manual for more help