524D/compareMS2

Issues

• Slow update of tree when pairwise comparisons already exist

  #61 opened in 3 hours
  0

• Parsing sample-to-species file

  #59 opened 11 days ago
  3

• QC colors disappear from tree

  #57 opened 16 days ago
  0

• Windows taskbar logo appear black

  #56 opened 6 months ago
  4

• Output intersect and complements in MGF

  #55 opened a year ago
  0

• For self-comparison, skip redundant file checks and memory allocation

  #54 opened a year ago
  0

• Possible intensity scaling issue for two-dataset comparison

  #53 opened a year ago
  1

• All mass differences at -1, 0, 1

  #52 opened a year ago
  1

• SDRF support for CLI and GUI

  #51 opened 2 years ago
  1

• Add 1-to-N and N-to-1 run modes

  #50 opened 2 years ago
  2

• exporting mzQC runQuality for compareMS2 comparison with reference dataset?

  #49 opened 2 years ago
  0

• Unexpected behavior when restricting RT window (msconvert bug?)

  #48 opened 2 years ago
  2

• How we can increase the speed of compareMS2

  #47 opened 2 years ago
  2

• Update 3.1 Configuring compareMS2 in README.md

  #46 opened 2 years ago
  0

• Replace Figure 1 in README.md with screenshot

  #45 opened 2 years ago
  0

• Debugger doesn't appear on Linux

  #44 opened 2 years ago
  0

• Add spectral angle (SA) metric for individual spectra comparisons

  #43 opened 3 years ago
  1

• Add (as experimental feature) summary of m/z and intensities of spectral comparisons in a specified dot product and delta-m/z range

  #42 opened 3 years ago
  0

• Quality color scale does not update after run is finished

  #41 opened 3 years ago
  1

• Red-blue-green color scale should be red-green-blue to be consistent

  #40 opened 2 years ago
  0

• Rightmost digits in QC legend axis not shown

  #39 opened 3 years ago
  1

• Consistent capitalization

  #38 opened 3 years ago
  0

• Error reading sample_to_species_mapping.txt

  #37 opened 3 years ago
  1

• Add license

  #36 opened 3 years ago
  1

• Make new release for beta testers

  #35 opened 3 years ago
  1

• Add RT filters

  #34 opened 3 years ago
  1

• Details disappear when finished - keep and/or save to log file.

  #33 opened 3 years ago
  0

• Start scan and End scan not used in hash?

  #32 opened 3 years ago
  2

• Latest compareMS.exe does not run in GUI

  #31 opened 3 years ago
  2

• Missing comparisons, branches and wrong tree when repeating analyses!

  #30 opened 3 years ago
  3

• Add Newick to the output formats

  #29 opened 3 years ago
  0

• Reset branch/node/root selections in phylogenetic tree?

  #28 opened 3 years ago
  0

• Supporting additional image formats?

  #27 opened 3 years ago
  1

• Indicate image file format in "Save picture"

  #26 opened 3 years ago
  1

• Advanced parameters that could be consider basic parameters

  #25 opened 3 years ago
  3

• Make checkbox for "compare all spectra"

  #24 opened 3 years ago
  0

• MGF files not shown when browsing for files/directories

  #23 opened 3 years ago
  1

• Automatic MEGA run

  #22 opened 3 years ago
  1

• Adding flag -x to enable experimental features of compareMS2

  #21 opened 3 years ago
  0

• Code cleanup, compareMS2

  #20 opened 3 years ago
  1

• Making remaining constants (advanced) user inputs

  #19 opened 3 years ago
  0

• Major changes to metrics, inputs and intermediary formats

  #18 opened 3 years ago
  1

• If at all possible, calculate (symmetric) global metric in a single pass

  #17 opened 4 years ago
  1

• Add spectrum selection filter to compareMS2

  #16 opened 3 years ago
  3

• Add picture of (new) GUI to instructions

  #15 opened 4 years ago
  0

• Show quality by label color

  #14 opened 3 years ago
  2

• Installation instructions (Linux)

  #13 opened 2 years ago
  1

• Tree limited to initial area

  #12 opened 2 years ago
  3

• Non-transparent background of Load and Save Options icons in File menu.

  #11 opened 4 years ago
  0

• Create OSF companion project for storing and sharing example data.

  #10 opened 4 years ago
  2