A-Oncol

A-Oncol's Stars

• SchapiroLabor/histoCAT

  Histology Topography Cytometry Analysis Toolbox

  Language:MATLAB6523

• BioinfoUNIBA/REDItools2

  Language:Python5216

• wenweixiong/MARVEL

  Language:R399

• xiaorudong/Escort

  Language:R74

• SunXQlab/ESICCC

  ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods

  Language:R121

• SunXQlab/ST-deconvoulution

  Language:R102

• SunXQlab/CCCbank

  CCCbank: an integrated computational pipeline for CCC inference by flexibly combining inference methods and prior databases

  Language:R7

• livnatje/ImmuneResistance

  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".

  Language:R7244

• leihe2021/CRDscore

  Language:R61

• SunXQlab/scMLnet

  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks

  Language:R258

• wguo-research/scCancer

  A package for automated processing of single cell RNA-seq data in cancer

  Language:R9742

• jumphone/FitDevo

  FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight

  Language:R142

• aet21/SCENT

  Estimation of Single-Cell Potency with Single Cell Entropy

  Language:R389

• Caolab2024/Cancer_stem_cells

  1

• hbctraining/Intro-to-ChIPseq

  Intro to ChIPseq using HPC

  Language:SCSS286154

• shenlab-sinai/diffreps

  Differential analysis for ChIP-seq with biological replicates

  Language:Perl3416

• chenhcs/scResolve

  Language:Python11

• XSLiuLab/TCfinder

  Language:R82

• dayoonkwon/BioAge

  Biological Age Calculations Using Several Biomarker Algorithms

  Language:R7225

• Chonghui-Liu/PACSI-project

  Language:HTML3

• Chonghui-Liu/DrugReSC

  DrugReSC, an innovative approach to drug repurposing utilizing single-cell RNA sequencing data, with the objective of targeting specific cell subpopulations critical to disease pathology.

  Language:HTML2

• yufanzhouonline/MUDI

  Multichannel Data Integration for single cells

  Language:Python2

• LieberInstitute/spatialLIBD

  Code for the spatialLIBD R/Bioconductor package and shiny app

  Language:R8217

• xjtu-omics/msisensor-rna

  MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data

  Language:Python192

• dylkot/cNMF

  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

  Language:Jupyter Notebook27157

• azizilab/starfysh

  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

  Language:Jupyter Notebook10213

• vkola-lab/tmi2022

  A graph-transformer for whole slide image classification

  Language:Python14635

• jbergenstrahle/STUtility

  Language:R4712

• drieslab/Giotto

  Spatial omics analysis toolbox

  Language:R26498

• IlyaLab/gssnng

  Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.

  Language:Jupyter Notebook123