ABRG-Models/Stalefish

Issues

• Number of sampling bins doesn't seem to get re-read from .h5

  #44 opened 3 years ago by sebjameswml
  1

• PointRow(Mesh)Visual fails with transformed surfaces

  #43 opened 3 years ago by sebjameswml
  0

• Fix links at https://github.com/ABRG-Models/Stalefish#morphologica-dependencies

  #42 opened 3 years ago by sebjameswml
  1

• There's a bug with global landmarks

  #35 opened 4 years ago by sebjameswml
  1

• Implement global landmark saving/realoading

  #41 opened 3 years ago by sebjameswml
  1

• Add @rpavlik's git revision cmake files to Stalefish

  #40 opened 3 years ago by sebjameswml
  1

• Make the window close buttons do the right thing

  #14 opened 4 years ago by sebjameswml
  2

• Algo for drawing freehand loops could be improved

  #15 opened 4 years ago by sebjameswml
  0

• Make the blur offset something that can be modified in the interface

  #29 opened 3 years ago by sebjameswml
  1

• Save out "bin profiles"

  #26 opened 3 years ago by sebjameswml
  1

• Add the option to set number of bins by 'bin width along the curve'.

  #8 opened 3 years ago by sebjameswml
  1

• Make file opening safer

  #22 opened 3 years ago by sebjameswml
  2

• Make points editable

  #23 opened 3 years ago by sebjameswml
  1

• Code up an undo feature

  #24 opened 3 years ago by sebjameswml
  1

• Implement export to Web3D X3D/VRML2 format

  #33 opened 3 years ago by sebjameswml
  3

• stalefish.sfview from the snap package forces the -e option

  #39 opened 3 years ago by sebjameswml
  1

• Create a package for Macs

  #36 opened 3 years ago by sebjameswml
  1

• Is it possible to slightly improve the alignment of the slices?

  #17 opened 3 years ago by sebjameswml
  2

• Capture SIGTERM and allow any file writing to complete before exiting

  #32 opened 4 years ago by sebjameswml
  0

• Fix bitrot in allen directory

  #34 opened 4 years ago by sebjameswml
  1

• Sort out single landmark option

  #25 opened 4 years ago by sebjameswml
  1

• Crash on Mac when writing out

  #31 opened 4 years ago by sebjameswml
  2

• FIXME: Write function to ensure same number of bins in each frame (temporarily), then:

  #30 opened 4 years ago by sebjameswml
  1

• Save out SD along with the mean for each sampling box

  #27 opened 4 years ago by sebjameswml
  1

• Bug: the flattened map is wonky right now

  #28 opened 4 years ago by sebjameswml
  1

• Make flattened layouts based on angle after 3D alignment

  #20 opened 4 years ago by sebjameswml
  1

• On loading a project, existing freehand loops don't show the correct values for their mean signal

  #21 opened 4 years ago by sebjameswml
  1

• Store position info of pixels in freehand loops

  #18 opened 4 years ago by sebjameswml
  2

• Store position info of pixels in bins

  #1 opened 4 years ago by sebjameswml
  3

• Small bug with landmark in autoalign computation

  #19 opened 4 years ago by sebjameswml
  1

• Default should be for same number of bins on every image?

  #7 opened 4 years ago by sebjameswml
  1

• Show landmark locations in viewer

  #16 opened 4 years ago by sebjameswml
  1

• Implement a slice alignment algo based on user-supplied points

  #11 opened 4 years ago by sebjameswml
  1

• Ensure that the offset window gets mirrored

  #13 opened 4 years ago by sebjameswml
  1

• Bug with orientation of slices

  #4 opened 4 years ago by sebjameswml
  1

• On completion of freehand loop, compute luminance and put it in text on the image.

  #9 opened 4 years ago by sebjameswml
  1

• Freehand loop luminance calculation needs fixing

  #10 opened 4 years ago by sebjameswml
  1

• On switching frames, throw away points on P?

  #12 opened 4 years ago by sebjameswml
  1

• Make the Gaussian blur and mRNA signal windows toggleable

  #6 opened 4 years ago by sebjameswml
  1

• Number of bins doesn't get reset correctly on re-loading

  #5 opened 4 years ago by sebjameswml
  1

• Implement "looped" regions

  #2 opened 4 years ago by sebjameswml
  1