ABignaud

Pinned Repositories

bacchus
Tools for analysis of BACterial Chromosome HiC data. (BACCHUS)
Language:Python3 2 02
ergatis
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.
Language:Perl0 0 00
Genomics_SupBioTech_2023
This repository contains instructions related to the 2023 Sup'BioTech course entitled "Genomics".
Language:CSS10
HiC_reassembler
Language:Python0 1 02
MetaCir
Library to detect circular contigs in a metagenomics assembly.
Language:Rust0 1 00
MetaVir
Metagenomic pipeline to bin virus and detect bacterial host based on HiC data and short reads assembly.
Language:Python1 1 00
oligomm_analysis
Analysis notebook for the characterization of the oligoMM 12 gut metapopulation.
Language:Jupyter Notebook2 1 00
OMM12_RNAseq_analysis
Pipeline to analyze RNA-seq of the OMM12 mice.
Language:Python0 1 00
transcription_T7_analysis
In this repository, we present the code for the analysis of study of the transcription's impact on Escherichia coli chromosome.
Language:Python1 1 11
Transcriptomics_SupBioTech_2023
This repository contains instructions related to the 2023 SupBioTech course entitled "Transcriptomics".
Language:CSS0 1 00

ABignaud's Repositories

ABignaud/bacchus
Tools for analysis of BACterial Chromosome HiC data. (BACCHUS)
Language:Python3 2 02
ABignaud/oligomm_analysis
Analysis notebook for the characterization of the oligoMM 12 gut metapopulation.
Language:Jupyter Notebook2 1 00
ABignaud/Genomics_SupBioTech_2023
This repository contains instructions related to the 2023 Sup'BioTech course entitled "Genomics".
Language:CSS10
ABignaud/MetaVir
Metagenomic pipeline to bin virus and detect bacterial host based on HiC data and short reads assembly.
Language:Python1 1 00
ABignaud/transcription_T7_analysis
In this repository, we present the code for the analysis of study of the transcription's impact on Escherichia coli chromosome.
Language:Python1 1 11
ABignaud/ergatis
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.
Language:Perl0 0 00
ABignaud/HiC_reassembler
Language:Python0 1 02
ABignaud/MetaCir
Library to detect circular contigs in a metagenomics assembly.
Language:Rust0 1 00
ABignaud/OMM12_RNAseq_analysis
Pipeline to analyze RNA-seq of the OMM12 mice.
Language:Python0 1 00
ABignaud/Transcriptomics_SupBioTech_2023
This repository contains instructions related to the 2023 SupBioTech course entitled "Transcriptomics".
Language:CSS0 1 00