/umap_tool

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Primary LanguageJavaScript

veitlab-vis

requirement

Node.js and related

  1. Node.js, you can DOWNLOAD HERE
  2. After download it, install some package ''' npm install fs --save npm install express --save npm install path --save npm install child_process --save '''

python3

make sure these packages are installed: numpy, pandas, json ''' pip install numpy pip install pandas pip install json '''

steps

step 1: prepare data

xyr_prepare_csv(inpath, outpath)
inpath is a folder path containing  "batch.keep". 
outpath is a output folder path.

step 2: start rendering

cd to veitlab_vis; 
use code 'node xyr_data_modify.js' to render

optional step: prepare data_folder for visualize

 cd to veitlab_vis; 
 python3 .\py\xyr_data_prepare.py UMAP_PATH(*.csv) SYLMAT_PATH(*.csv) OUTPUT_PATH(folder)
 mv OUTPUT_PATH/data veitlab_vis/;

step 3: view in browser

type localhost:8080 in any browser (chrome and firefox are recommended)
[if didn't finish the optional step] upload output files in step1 and wait for 1-2 mins (processing time)
[finish optional step]: click Use data in folder to start immediately
modify labeling data and click to download changed umap results