The goal of tidyMicro is to provide a cohesive pipeline for microbiome data analysis and visualization.
You can install the latest version of tidyMicro from this GitHub using
devtools::install_github("CharlieCarpenter/tidyMicro",
build_vignettes = TRUE) ## Recommended
Or you can install the latest release of tidyMicro from CRAN using
install.packages("tidyMicro")
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Merge any number OTU tables with clinical data into one tidy data set
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Data visualization for exploration
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Calculate, analyze, and visualize diversity measures
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Fit negative binomial, beta binomial, rank sum, and presence absence models
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Create stacked bar charts based on negative binomial and beta binomial model estimates
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Longitudinal PCA plots