AIM-Harvard/pyradiomics

[FEAT EXTRACTION] Same data coming from different data labels

limichael2004 opened this issue · 1 comments

Hi, I am not sure if anyone has experienced this before. I am using pyradionomics to extract data from different ROI defined by total segmentator. However, I am getting the exact same data for the various ROI.

I have simplified it manually and am still getting the same issue; for example
pyradiomics Rawimage.raw.nii.gz Maskimage.ml.nii.gz --label 107 (#this is heart label from total segmentator) --param path/to/final.yaml -o output_heart.csv

will give the same data on the csv as
pyradiomics Rawimage.raw.nii.gz Maskimage.ml.nii.gz --label 4(#this is aortalabel from total segmentator) --param path/to/final.yaml -o output_aorta.csv

i am having trouble identifying where the issue is coming from, has anyone ever experienced this or can provide input, thanks!

It was from a deprecated command; needed to use setting "label:$label"