cancer-imaging-research
There are 53 repositories under cancer-imaging-research topic.
OHIF/Viewers
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
AIM-Harvard/pyradiomics
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
lishen/end2end-all-conv
Deep Learning to Improve Breast Cancer Detection on Screening Mammography
QIICR/dcmqi
dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results
CBICA/CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
mahmoodlab/TOAD
AI-based pathology predicts origins for cancers of unknown primary - Nature
davidssmith/DCEMRI.jl
DCE MRI analysis in Julia
calico/spatial_lda
Probabilistic topic model for identifying cellular micro-environments.
nadeemlab/CIR
Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]
zhenweishi/Py-rex
Open source of Pyradiomics extension
radxtools/collageradiomics
Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.
duggalrahul/Overlapping-Cell-Nuclei-Segmentation-using-DBN
Code accompanying our ICVGIP 2016 paper
mida-project/meta
:paperclip: About MIDA Project
MahdiAll99/MEDimage
Python Open-source package for medical images processing and radiomics features extraction.
fpaupier/cancerous_cells_scans_processing
Predict survival time from PET scans
inboxpraveen/Skin-cancer-lesion-detection
This repository contains skin cancer lesion detection models. These are trained on a sequential and a custom ResNet model
ryanneph/BNPSeg
Bayesian Non-Parametric Image Segmentation using HDP-MRF
arjunbahuguna/skin-cancer-classification
Skin cancer classification using transfer learning
ccipd/RADISTAT
Reference MATLAB and Python implementations of the RADISTAT algorithm
rymshasaeed/Automated-Eye-Cancer-Detection
Deep ConvNets based eye cancer detection
skr1/Imagene
ImaGene: A multi-omic ML/AI software with guided operational reports and supporting files
ccipd/CoLlAGeSlicerExtension
3D Slicer Extension Implementation the CoLlAGe radiomics descriptor
EhtashamBillah/Acute-Lymphoblastic-Leukemia-cell-classification-using-Bayesian-Convolutional-Neural-Networks
In this project, we deploy the Bayesian Convolution Neural Networks (BCNN), proposed by Gal and Ghahramani [2015] to classify microscopic images of blood samples (lymphocyte cells). The data contains 260 microscopic images of cancerous and non-cancerous lymphocyte cells. We experiment with different network structures to obtain the model that return lowest error rate in classifying the images. We estimate the uncertainty for the predictions made by the models which in turn can assist a doctor in better decision making. The Stochastic Regularization Technique (SRT), popularly known as Dropout is utilized in the BCNN structure to obtain the Bayesian interpretation.
Kafri-Lab/Cell-Tracking
Track 2D cell motion and mitosis in time-lapse microscopy
radxtools/radpathfusion
Jupyter notebook with Python-based workflow for co-registration of radiographic imaging (MRI/CT etc.) with digitized pathology images, and mapping annotations from pathology onto imaging.
radxtools/topology-radiomics
Python implementation of topology descriptors which capture subtle sharpness and curvature differences along the surface of diseased pathologies on imaging.
anishnyk/ccRCC-CT-texture-analysis-and-classification
Classification of Clear Cell Renal Cell Carcinoma using CT textural feature analysis
ComplexOrganizationOfLivingMatter/NeuroblastomeIntegration
"The topology of vitronectin: A complementary feature for neuroblastoma risk classification based on computer‐aided detection" by Vicente-Munuera et al.
jszym/PPReCOGG
Per-Pixel Recognition of Cancers using Oriented Gabor filter on the GPU
darshanbagul/Cervical_Cancer_Kaggle
Implementation of a classification algorithm which accurately identifies cervix type based on images for Kaggle challenge using Keras
mida-project/prototype-multi-modality-assistant
[IJHCS] An assistant prototype for breast cancer diagnosis prepared with a multimodality strategy. The work was published in the International Journal of Human-Computer Studies.
udiram/Glioblastoma_analysis
Detecting various characteristics of glioblastoma using Deep Learning
MEDomics-UdeS/MEDimage
Python Open-source package for medical images processing and radiomics features extraction.
preclinical-imaging/pixi-plugin
PIXI is an XNAT plugin designed to help manage and analyze preclinical imaging data.