AIM-Harvard/pyradiomics

MemoryError while running feature extraction

amitjc opened this issue · 0 comments

amitjc commented

Describe the bug
Dear Experts,
I am trying run feature extraction from HCC CT images. However, executing pyradiomics "path\to\image.nii" "path\to\mask.nrrd" --out-dir "path\to\Radiomics" --mode voxel --log-file path\to\run_21.6.24.txt fails with a MemoryError.

PyRadiomics configuration
Pyradiomics_Params.txt

PyRadiomics log file
run_21.6.24.txt

To Reproduce
Steps to reproduce the behavior:
pyradiomics "path\to\image.nii" "path\to\mask.nrrd" --out-dir "path\to\Radiomics" --mode voxel --log-file path\to\run_21.6.24.txt

Version:

  • OS: Windows 11, 64-bit, 23H2
  • Python version: 3.11.7
  • PyRadiomics version: 3.0.1a1

Additional context
Please guide to address this error.
Please advice whether the used syntax and arguments are optimal for feature extraction from CT scan.
Is there a way to save the resampled image and mask as well as LoG and wavelet transformed images?