AMChalkie

Scientist, avid reader, coffee addict, nutrition geek (JERF/LCHF/Keto) and data professional. Sceptic, contrarian, meditator. Often found dancing.

Walter and Eliza Hall Institute of Medical ResearchMelbourne, Australia

Pinned Repositories

CB2
Language:R0 1 00
foreign
Modified or extracted from other programs
Language:C0 2 00
goldmine
Annotate genomic contexts and discover functional element enrichments
Language:R0 2 00
JACUSA
JAVA framework for accurate SNV assessment
Language:HTML0 2 00
LSD
:exclamation: This is a read-only mirror of the CRAN R package repository. LSD — Lots of Superior Depictions
Language:R0 1 00
MINTIE
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
Language:Python0 1 00
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
Language:HTML0 2 00
REDItools
REDItools are python scripts to investigate RNA editing at genomic scale.
Language:Python0 1 00
RNAEditingIndexer
A tool for the calculation of RNA-editing index for RNA seq data
Language:Makefile0 1 00
superTranscript_paper_code
This repository contains code and scripts used to generate and analyse data for the superTranscript/Lace paper.
Language:Jupyter Notebook0 2 00

AMChalkie/CB2
Language:R0 1 00
AMChalkie/foreign
Modified or extracted from other programs
Language:C0 2 00
AMChalkie/goldmine
Annotate genomic contexts and discover functional element enrichments
Language:R0 2 00
AMChalkie/JACUSA
JAVA framework for accurate SNV assessment
Language:HTML0 2 00
AMChalkie/LSD
:exclamation: This is a read-only mirror of the CRAN R package repository. LSD — Lots of Superior Depictions
Language:R0 1 00
AMChalkie/MINTIE
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
Language:Python0 1 00
AMChalkie/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
Language:HTML0 2 00
AMChalkie/REDItools
REDItools are python scripts to investigate RNA editing at genomic scale.
Language:Python0 1 00
AMChalkie/RNAEditingIndexer
A tool for the calculation of RNA-editing index for RNA seq data
Language:Makefile0 1 00
AMChalkie/superTranscript_paper_code
This repository contains code and scripts used to generate and analyse data for the superTranscript/Lace paper.
Language:Jupyter Notebook0 2 00
AMChalkie/SUPPA
SUPPA2: Fast quantification of differential splicing
Language:Python1 0
AMChalkie/test_workflowr
Language:R1 0
AMChalkie/tidybulk
Brings transcriptomics to the tidyverse
Language:R1 0