The Wang lab at AMSS
Optimization and Computational Systems Biology
Academy of Mathematics and System Science, CAS55 Zhongguancun East Road, Haidian District, Beijing
Pinned Repositories
3SCover
3SCover is a method to identify safeguard TF from cell type -TF network by an extended mimimum set cover model.
ClusterMatch
cTOP
hReg-CNCC
hReg-CNCC is a high-quality Regulatory network of Cranial Neural Crest Cell (CNCC), built by consensus optimization.
RE-GOA
A tool for non-coding genomic regions function enrichment analysis based on Regulatory Elements Gene Ontology Annotation (RE-GOA)
scPECA
scTIM
scTIM is a convenient tool for cell-type indicative marker detection based on single cell RNA-seq data
SpecLoop
SpecLoop is a method for predicting cell type-specific chromatin loops via transcription factor cooperation.
SpecVar
SpecVar is a convenient tool for estimating interpretable genetic correlation of human complex traits and annotating the SNPs with context specific regulatory networks
vPECA
vPECA is a Variants interpretation method by Paired Expression and Chromatin Accessibility data which can identify active and active selected regulatory elements and their gene regulatory network.
The Wang lab at AMSS's Repositories
AMSSwanglab/vPECA
vPECA is a Variants interpretation method by Paired Expression and Chromatin Accessibility data which can identify active and active selected regulatory elements and their gene regulatory network.
AMSSwanglab/SpecVar
SpecVar is a convenient tool for estimating interpretable genetic correlation of human complex traits and annotating the SNPs with context specific regulatory networks
AMSSwanglab/hReg-CNCC
hReg-CNCC is a high-quality Regulatory network of Cranial Neural Crest Cell (CNCC), built by consensus optimization.
AMSSwanglab/RE-GOA
A tool for non-coding genomic regions function enrichment analysis based on Regulatory Elements Gene Ontology Annotation (RE-GOA)
AMSSwanglab/scTIM
scTIM is a convenient tool for cell-type indicative marker detection based on single cell RNA-seq data
AMSSwanglab/3SCover
3SCover is a method to identify safeguard TF from cell type -TF network by an extended mimimum set cover model.
AMSSwanglab/ClusterMatch
AMSSwanglab/cTOP
AMSSwanglab/SpecLoop
SpecLoop is a method for predicting cell type-specific chromatin loops via transcription factor cooperation.
AMSSwanglab/CNEReg
AMSSwanglab/GuidingNet
GuidingNet is a method to reveal transcriptional cofactor and predict binding for DNA methyltransferase by network regularization.
AMSSwanglab/MIMIC
AMSSwanglab/scPECA
AMSSwanglab/cRegulon
cRegulon is an optimization model to identify combinatorial regulon from single cell expression and chromatin accessibility data.
AMSSwanglab/MutNet
A heterogeneous network embedding based method by integrating genomic data with genes’ biological processes including protein-protein interactions and pathways.
AMSSwanglab/RP3
RP3 (RNA Polymerase II Pausing Prediction) is a method for predicting transcriptional elongation Pol II pausing by integrating multi-omics data