Pinned Repositories
awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
CellProfiler
An open-source application for biological image analysis
core
Core classes and components used by CellProfiler
EMPHASIS
Epiclomal
Epiclomal package, software for clustering of sparse DNA methylation data
godmc
GoDMC analysis pipeline
meffil
Efficient algorithms for analyzing DNA methylation data.
melodi
Mining Enriched Literature Objects to Derive Intermediates
AST87's Repositories
AST87/awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
AST87/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
AST87/CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
AST87/CellProfiler
An open-source application for biological image analysis
AST87/core
Core classes and components used by CellProfiler
AST87/EMPHASIS
AST87/Epiclomal
Epiclomal package, software for clustering of sparse DNA methylation data
AST87/godmc
GoDMC analysis pipeline
AST87/meffil
Efficient algorithms for analyzing DNA methylation data.
AST87/melodi
Mining Enriched Literature Objects to Derive Intermediates
AST87/meth_atlas
AST87/methylpy
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
AST87/MGcount
MGcount github repository
AST87/NetSeekR
A networks analysis pipeline for RNASeq time series data
AST87/scbs
Python package with CLI for downstream analysis of single cell methylation data.
AST87/souporcell
Clustering scRNAseq by genotypes
AST87/spacemake
AST87/stat_rethinking_2022
Statistical Rethinking course winter 2022
AST87/StemID
Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.
AST87/wgbs_tools
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies