ATpoint

Postdoc, working in the context of cardiovascular disease and circadian rhythms.

Germany

Pinned Repositories

atac_chip_preprocess
Preprocessing workflow for ATAC-seq and ChIP-seq data
Language:Nextflow1 2 90
bam2bedgraph
A bash script to convert bam files to bedGraph or BigWig files.
Language:Shell0 1 20
circtools
Functions related to analysis of circadian / circular data in R.
Language:R1 1 00
CreateGeneSignatures
Create celltype-specific gene signatures based on expression data using a rank-based approach
Language:R2 1 30
NGS_Pipelines
Bash pipelines for processing of NGS data
Language:Shell1 0 00
rnaseq_preprocess
Preprocessing of RNA-seq data using salmon and tximport
Language:Nextflow1 2 110
sc_preprocess
Preprocessing of UMI-based scRNA-seq supporting spliced/unspliced count generation and feature barcoding experiments with alevin
Language:Nextflow2 2 120
SigGenes
Automated differential expression and signature generation from bulk and single-cell data
Language:R1 1 40
vizzy
Plotting functions for genomics using ggplot2
Language:R1 1 12

ATpoint/CreateGeneSignatures
Create celltype-specific gene signatures based on expression data using a rank-based approach
Language:R2 1 30
ATpoint/sc_preprocess
Preprocessing of UMI-based scRNA-seq supporting spliced/unspliced count generation and feature barcoding experiments with alevin
Language:Nextflow2 2 120
ATpoint/atac_chip_preprocess
Preprocessing workflow for ATAC-seq and ChIP-seq data
Language:Nextflow1 2 90
ATpoint/circtools
Functions related to analysis of circadian / circular data in R.
Language:R1 1 00
ATpoint/NGS_Pipelines
Bash pipelines for processing of NGS data
Language:Shell1 0 00
ATpoint/rnaseq_preprocess
Preprocessing of RNA-seq data using salmon and tximport
Language:Nextflow1 2 110
ATpoint/SigGenes
Automated differential expression and signature generation from bulk and single-cell data
Language:R1 1 40
ATpoint/vizzy
Plotting functions for genomics using ggplot2
Language:R1 1 12
ATpoint/bam2bedgraph
A bash script to convert bam files to bedGraph or BigWig files.
Language:Shell0 1 20
ATpoint/dockerbioc
Personalized Docker images based on Bioconductor
Language:Dockerfile0 1 00
ATpoint/nf_findMotifs
Wrapper to automate motif enrichment analysis via findMotilfs.pl using Nextflow
Language:Nextflow0 1 10
ATpoint/random_dockers
Collection of Dockerfiles for various purposes
Language:Dockerfile0 1 00
ATpoint/ijm_utils
Collection of macros and helper functions for ImageJ
Language:ImageJ Macro