ATpoint
Postdoc, working in the context of cardiovascular disease and circadian rhythms. As a PhD student I was working in the context of hematopoiesis and leukemia.
Germany
Pinned Repositories
atac_chip_preprocess
Preprocessing workflow for ATAC-seq and ChIP-seq data
bam2bedgraph
Bash wrappers to create, average and normalize bigwig files
bender_et_al_2024
Code documentation for our paper Bender et al (2024) - EMBO - doi: 10.1038/s44318-024-00295-y
circtools
Functions related to analysis of circadian / circular data in R.
CreateGeneSignatures
Create celltype-specific gene signatures based on expression data using a rank-based approach
NGS_Pipelines
Bash pipelines for processing of NGS data
rnaseq_preprocess
Preprocessing of RNA-seq data using salmon and tximport
sc_preprocess
Preprocessing of UMI-based scRNA-seq supporting spliced/unspliced count generation and feature barcoding experiments with alevin
SigGenes
Automated differential expression and signature generation from bulk and single-cell data
ATpoint's Repositories
ATpoint/CreateGeneSignatures
Create celltype-specific gene signatures based on expression data using a rank-based approach
ATpoint/sc_preprocess
Preprocessing of UMI-based scRNA-seq supporting spliced/unspliced count generation and feature barcoding experiments with alevin
ATpoint/atac_chip_preprocess
Preprocessing workflow for ATAC-seq and ChIP-seq data
ATpoint/circtools
Functions related to analysis of circadian / circular data in R.
ATpoint/NGS_Pipelines
Bash pipelines for processing of NGS data
ATpoint/rnaseq_preprocess
Preprocessing of RNA-seq data using salmon and tximport
ATpoint/SigGenes
Automated differential expression and signature generation from bulk and single-cell data
ATpoint/vizzy
Plotting functions for genomics using ggplot2
ATpoint/bam2bedgraph
Bash wrappers to create, average and normalize bigwig files
ATpoint/bender_et_al_2024
Code documentation for our paper Bender et al (2024) - EMBO - doi: 10.1038/s44318-024-00295-y
ATpoint/dockerbioc
Personalized Docker images based on Bioconductor
ATpoint/nf_findMotifs
Wrapper to automate motif enrichment analysis via findMotilfs.pl using Nextflow
ATpoint/random_dockers
Collection of Dockerfiles for various purposes
ATpoint/ijm_utils
Collection of macros and helper functions for ImageJ