Pinned Repositories
CancerOmicsNet
A Graph Neural Network Model for prediction of the effectiveness of a drug on a given cancer cell lines
datasharing
The Leek group guide to data sharing
deepTools
Tools to process and analyze deep sequencing data.
Distribution_genic_elements
A python script to specify the locatopn of the read on mRNA
Filter_HiC
Method used to filter HiC chunks for SNPs affecting far away regions
GEXF-
GNN-Learning-and-Integration
Awesome GNN Learning For beginners
hic-project
relative_positioning_start_codon
a python script to determine the localization of reads around the start codon
RNA_structure_analysis
Abdelmonsif's Repositories
Abdelmonsif/CancerOmicsNet
A Graph Neural Network Model for prediction of the effectiveness of a drug on a given cancer cell lines
Abdelmonsif/datasharing
The Leek group guide to data sharing
Abdelmonsif/deepTools
Tools to process and analyze deep sequencing data.
Abdelmonsif/Distribution_genic_elements
A python script to specify the locatopn of the read on mRNA
Abdelmonsif/Filter_HiC
Method used to filter HiC chunks for SNPs affecting far away regions
Abdelmonsif/GeneticRiskAndTADs
Investigate TADs/SNPs and diseases
Abdelmonsif/GEXF-
Abdelmonsif/GNN-Learning-and-Integration
Awesome GNN Learning For beginners
Abdelmonsif/hic-project
Abdelmonsif/relative_positioning_start_codon
a python script to determine the localization of reads around the start codon
Abdelmonsif/RNA_structure_analysis
Abdelmonsif/gwas-breast-cancer
Identifying the importance (association) of SNPs to breast cancer.
Abdelmonsif/HiC-GNN
A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks
Abdelmonsif/latex-moderncv
My latex resume using the moderncv template
Abdelmonsif/lbrnloniworkshop2018
Repository for 1st LBRN/LONI Scientific Computing Bootcamp
Abdelmonsif/Linear_structure_vs_3D
Abdelmonsif/MACS
MACS -- Model-based Analysis of ChIP-Seq
Abdelmonsif/Map_plot
Plotting RNAseq and polysome associated seq and CLIP seq
Abdelmonsif/Mapping-disorder
map SNPs to order and disorder database
Abdelmonsif/Mapping_core
filter the mapped SNPs and map to surface (NIS(Non-Interacting Interface) or core or interacting interface
Abdelmonsif/Mapping_SNPs
map SNPs to crystal structures
Abdelmonsif/nucleotide_composition
A python script to identify the nucleotide composition of the 3' end of a sam file
Abdelmonsif/olgabotvinnik.com
Personal website
Abdelmonsif/Random_nucleotide_enrichment
compare nucleotide enrichment of RNA binding proteins (can be used also for CHIP-seq)
Abdelmonsif/scHiCExplorer
Single-cell Hi-C data analysis toolbox