Abe404
Developing RootPainter and RootPainter3D for radiation oncology and plant science | Deep learning | Interactive machine learning | Phenotyping
University of Copenhagen
Pinned Repositories
cementjs
dicom_mask
convert dicom to numpy
learn_c
second attempt at doing learn c the hard way
localise_to_segment
Localise to segment: crop to improve organ at risk segmentation accuracy
mask_to_dicom_rtstruct
Convert numpy mask to dicom rtstruct
pytorch-gconv-experiments
Experiments with Group Equivariant Convolutions in PyTorch
Pytorch-UNet
Pytorch implementation of the U-Net for image semantic segmentation, with dense CRF post-processing
root_painter
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
RootPainter3D
RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy
segmentation_of_roots_in_soil_with_unet
Code for the paper "Segmentation of Roots in Soil with U-Net"
Abe404's Repositories
Abe404/root_painter
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
Abe404/RootPainter3D
RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy
Abe404/segmentation_of_roots_in_soil_with_unet
Code for the paper "Segmentation of Roots in Soil with U-Net"
Abe404/mask_to_dicom_rtstruct
Convert numpy mask to dicom rtstruct
Abe404/dicom_mask
convert dicom to numpy
Abe404/cementjs
Abe404/learn_c
second attempt at doing learn c the hard way
Abe404/localise_to_segment
Localise to segment: crop to improve organ at risk segmentation accuracy
Abe404/pytorch-gconv-experiments
Experiments with Group Equivariant Convolutions in PyTorch
Abe404/Pytorch-UNet
Pytorch implementation of the U-Net for image semantic segmentation, with dense CRF post-processing
Abe404/rp_annot
Sparse binary data compression
Abe404/abe404.github.io
Abe404/awesome-data-labeling
A curated list of awesome data labeling tools
Abe404/batchgenerators
A framework for data augmentation for 2D and 3D image classification and segmentation
Abe404/create_image_tiles
Abe404/DART
scripts to work with evaluation of dose summation reproducibility
Abe404/dicom_outliner
Create a HU 3000 outline in a dicom scan using a specified structure
Abe404/Dicom_RT_and_Images_to_Mask
Various utilities created to help with the interpretation of dicom images/RT Structures
Abe404/fastai
The fastai deep learning library, plus lessons and tutorials
Abe404/im_mask
mask an image
Abe404/keras
Deep Learning for humans
Abe404/node-mocks-http
Mock 'http' objects for testing Express routing functions
Abe404/PROSTATEx_masks
Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.
Abe404/segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
Abe404/seminal_root_angle
Abe404/task_timer
Time tasks and save data to a CSV.
Abe404/tensorflow
Computation using data flow graphs for scalable machine learning
Abe404/texfig
Utility to generate PGF vector files from Python's Matplotlib plots to use in LaTeX documents.
Abe404/tplx-ds
a repo for a recruitment task